Browse Element(s) Details


Os.36273.1.S1_at

Description gb:AK063899.1
DB_XREF= gi:32973917
TID=Os.36273.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.36273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.11 (P0431H09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H03, full insert sequence.
FL= gb:AK063899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4994011/11Symplekin, putative, expressed
LOC_Os10g301001/11Nucleolar protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
GO:0008408molecular_function3'-5' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36273.1.S1_at--27--9851Chr01:29011146..29011170 (25 bp)
TAAAGGTTCATTGCGCTTGTGCTCG
LOC_Os01g49940
Os.36273.1.S1_at--886--8311Chr01:29011118..29011142 (25 bp)
GGCTCCTATGATTTTGCAGCCCGTG
LOC_Os01g49940
Os.36273.1.S1_at--387--5071Chr01:29011103..29011127 (25 bp)
GCAGCCCGTGCAAGTTGTACAGTAG
LOC_Os01g49940
Os.36273.1.S1_at--647--1171Chr01:29011083..29011107 (25 bp)
AGTAGTTGTACTCTTTCGTCCTGCA
LOC_Os01g49940
Os.36273.1.S1_at--1161--3151Chr01:29011059..29011083 (25 bp)
AATTGCGGACTGAGGCTTCTGTGAC
LOC_Os01g49940
Os.36273.1.S1_at--263--10431Chr01:29010991..29011015 (25 bp)
TTATCATCATCATGTCTTCCGCCAA
LOC_Os01g49940
Os.36273.1.S1_at--917--9011Chr01:29010952..29010976 (25 bp)
TGCAAGCTGCGGCAATGCGGCATTC
LOC_Os01g49940
Os.36273.1.S1_at--563--1391Chr01:29010910..29010934 (25 bp)
AGACGGCATCCGACTGATTGGCTAA
LOC_Os01g49940
Os.36273.1.S1_at--187--6612Chr10:15310378..15310402 (23 bp)
GATTGGCTAACCATTTCTTCTGTTC
LOC_Os10g30100
Os.36273.1.S1_at--334--9811Chr01:29010840..29010864 (25 bp)
TAACTATTTGAGTCCGCTGTCAGCC
LOC_Os01g49940
Os.36273.1.S1_at--368--231Chr01:29010739..29010763 (25 bp)
ATATTAGCGCCGTTGATTTTCTTCG
LOC_Os01g49940
Target Sequence 
TAAAGGTTCATTGCGCTTGTGCTCGAGGGGCTCCTATGATTTTGCAGCCCGTGCAAGTTGTACAGTAGTTGTACTCTTTC
GTCCTGCAATTGCGGACTGAGGCTTCTGTGACAAGCAAAGAATAGAAGGAATATTGTTTAGGACGATGATATGACTTATC
ATCATCATGTCTTCCGCCAAGGAAATGACATGGTTGCAAGCTGCGGCAATGCGGCATTCCTTTCCGAGCTGCACGGAGAC
GGCATCCGACTGATTGGCTAACCATTTCTTCTGTTCTAATGCTAACAATGTCTGAGTATTGTACATTAACTATTTGAGTC
CGCTGTCAGCCGATGTTAANCCTTTCATCTCAGAAGATAATAATTTATAGATGTTTTGATTGACTAGCATATCAAAGGTA
ATAGACAATATTAGCGCCGTTGATTTTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis