Browse Element(s) Details


OsAffx.11538.2.S1_at

Description tigr:9634.m00458
TID=OsAffx.11538.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g499602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11538.2.S1_at--934--10531Chr06:2408067..2408091 (25 bp)
TTCAGTTTCTGCTCGAGGGCGGCAG
NONE
OsAffx.11538.2.S1_at--117--8411Chr06:2407718..2407742 (25 bp)
GGCGCCGTTCCAATCGATGCCGAGG
NONE
OsAffx.11538.2.S1_at--435--891Chr06:2407696..2407720 (25 bp)
AGGCCGCCATGGATTTGGTCCTCAT
NONE
OsAffx.11538.2.S1_at--17--4351Chr06:2407690..2407714 (25 bp)
CCATGGATTTGGTCCTCATGGCGGC
NONE
OsAffx.11538.2.S1_at--146--2891Chr06:2407604..2407628 (25 bp)
AAGGGATTTTTCCATGGGCGAATCT
NONE
OsAffx.11538.2.S1_at--92--7572Chr06:2407589..2407613 (25 bp)
GGGCGAATCTGGAATTTCTACGAGT
NONE
OsAffx.11538.2.S1_at--1110--171Chr06:2407576..2407600 (25 bp)
ATTTCTACGAGTGCTGCGTGCGCGA
NONE
OsAffx.11538.2.S1_at--267--4152Chr06:2407492..2407516 (25 bp)
CGCGTGGATTCGACCGAGCAAGGTT
NONE
OsAffx.11538.2.S1_at--99--112Chr06:2407485..2407509 (25 bp)
ATTCGACCGAGCAAGGTTGCGCGTT
NONE
OsAffx.11538.2.S1_at--924--5771Chr06:2407448..2407472 (25 bp)
GACGAGCGACCAAGTTTGGTCCCGG
NONE
OsAffx.11538.2.S1_at--488--7891Chr06:2407425..2407449 (25 bp)
GGTTCCACACGACACGTCGGACAAA
NONE
Target Sequence 
TTCAGTTTCTGCTCGAGGGCGGCAGCAGCTTCAGTCCGCCGCCATGCGGAGGCAGGGAGGGGTCGGCGTGGCCTGGGGCG
TGGCGGCGGCGGCGGATCTCCCGACAACTACACCTCTTGCACACGGCGGCGGCGGATCTCGGCCTGCTCCGGCGCCGTTC
CAATCGATGCCGAGGCCGCCATGGATTTGGTCCTCATGGCGGCGAGGCTGATGCCGGCGCGGGAGAAAGGACTCGGTGGT
GGGAGGATGAATTGCAGGCGTGGGAAGGGATTTTTCCATGGGCGAATCTGGAATTTCTACGAGTGCTGCGTGCGCGAGGT
CACGGGCGGCCAAGCACCGACGCCCACAGCGCTCGCTCCTCGCGTTTTTTTGGCGGCGCGTGGATTCGACCGAGCAAGGT
TGCGCGTTGCTCTGCTTGGGGACGAGCGACCAAGTTTGGTCCCGGTTCCACACGACACGTCGGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11538.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis