Browse Element(s) Details


OsAffx.28355.2.S1_at

Description tigr:9635.m00850
TID=OsAffx.28355.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0894011/11hypothetical protein
LOC_Os01g500203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28355.2.S1_at--1077--10211Chr07:4648493..4648517 (25 bp)
TATTGCCACGCTCAACAACATGCTT
LOC_Os07g08940
OsAffx.28355.2.S1_at--1112--2491Chr07:4648477..4648501 (25 bp)
AACATGCTTGTGACATGCCGCAACA
LOC_Os07g08940
OsAffx.28355.2.S1_at--851--4911Chr07:4648448..4648472 (25 bp)
GCTTGAGTCAATCACGAGCGTTGGT
LOC_Os07g08940
OsAffx.28355.2.S1_at--600--1711Chr07:4648420..4648444 (25 bp)
ACCAGAGTGGTGACAGCTAAAAGCA
LOC_Os07g08940
OsAffx.28355.2.S1_at--536--8891Chr07:4648322..4648346 (25 bp)
TGAGTTCTACATGGTGACAACTACC
LOC_Os07g08940
OsAffx.28355.2.S1_at--855--9012Chr07:4648191..4648215 (25 bp)
TGCAAACAGGTAGCTCTCCACCAGT
LOC_Os07g08940
OsAffx.28355.2.S1_at--719--6291Chr07:4648127..4648151 (25 bp)
GATGACCTTAGGTTATCGTCCTTTA
LOC_Os07g08940
OsAffx.28355.2.S1_at--827--10151Chr07:4648114..4648138 (25 bp)
TATCGTCCTTTACCATGGCATGATC
LOC_Os07g08940
OsAffx.28355.2.S1_at--901--8271Chr07:4648098..4648122 (25 bp)
GGCATGATCCATGGTTGAGTCAAGA
LOC_Os07g08940
OsAffx.28355.2.S1_at--129--8852Chr07:4648059..4648083 (25 bp)
TGATGACGAAGCTCTTACATCCCCA
LOC_Os07g08940
OsAffx.28355.2.S1_at--42--1492Chr07:4648035..4648059 (25 bp)
AGCAACCACCTTCTCAAGCAGAAGT
LOC_Os07g08940
Target Sequence 
TATTGCCACGCTCAACAACATGCTTGTGACATGCCGCAACATCAAGCTTGAGTCAATCACGAGCGTTGGTATCACCAGAG
TGGTGACAGCTAAAAGCACCAACACTAAATCTGTCCCCAACACATTGGAGGTCAGTGATGAGGCCAATTCAATCAGCTTG
GTTGATACTAATGAGTTCTACATGGTGACAACTACCAAGTGTTTGACGAAAGGCAATGAACAAATGATCAATGATGATGA
CGATGACATGGCCACCGAGGATTTAGTTGAGCTCACTAAAGTGAATTCCAAGTTCACACTACTGCAAACAGGTAGCTCTC
CACCAGTATCACCTTGGAGAGCGGCAATTCCATGGTACAAAGCTGAGATGACCTTAGGTTATCGTCCTTTACCATGGCAT
GATCCATGGTTGAGTCAAGACAGCGGAAGCGTGGTGATGACGAAGCTCTTACATCCCCAGCAACCACCTTCTCAAGCAGA
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28355.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis