Browse Element(s) Details


OsAffx.5257.1.S1_at

Description tigr:9635.m00855
TID=OsAffx.5257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0897011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5257.1.S1_at--1007--8931Chr07:4662736..4662760 (25 bp)
TGACGGATGACATTGGAGCTGCCAA
LOC_Os07g08970
OsAffx.5257.1.S1_at--330--4791Chr07:4662719..4662743 (25 bp)
GCTGCCAATGTGATTCTTGCATCGA
LOC_Os07g08970
OsAffx.5257.1.S1_at--1089--3331Chr07:4662674..4662698 (25 bp)
CACTGGATTCGCAATGTCGCCAAAT
LOC_Os07g08970
OsAffx.5257.1.S1_at--364--531Chr07:4662171..4662195 (25 bp)
ATCCCAGGTGGAGAGCCCGTAGAAC
LOC_Os07g08970
OsAffx.5257.1.S1_at--568--6271Chr07:4662137..4662161 (25 bp)
GATGTTCAGAAATAGTTGCCCGGCA
LOC_Os07g08970
OsAffx.5257.1.S1_at--816--10691Chr07:4662122..4662146 (25 bp)
TTGCCCGGCAACTGGAGCTTGTTGA
LOC_Os07g08970
OsAffx.5257.1.S1_at--93--8471Chr07:4662083..4662107 (25 bp)
TGGCCGAAACCTTTGGAACTGACTC
LOC_Os07g08970
OsAffx.5257.1.S1_at--773--5451Chr07:4662068..4662092 (25 bp)
GAACTGACTCCAACTCGAGGTTGCA
LOC_Os07g08970
OsAffx.5257.1.S1_at--40--6171Chr07:4662052..4662076 (25 bp)
GAGGTTGCAGATTCTTCCGGTGAAA
LOC_Os07g08970
OsAffx.5257.1.S1_at--655--3451Chr07:4662001..4662025 (25 bp)
CAGTGCAGGATCGATGCCCAAGCAA
LOC_Os07g08970
OsAffx.5257.1.S1_at--574--2731Chr07:4661982..4662006 (25 bp)
AAGCAAGGCAGCTCTGACCTGATCG
LOC_Os07g08970
Target Sequence 
TGACGGATGACATTGGAGCTGCCAATGTGATTCTTGCATCGAGTTCTGAGATGAAGCAGAATCACTGGATTCGCAATGTC
GCCAAATACCACAAGCTTCCCATATTTGTTGTTAAGACAAACACAATGGCTCAGATAGTAAAGGCTGTTAGAATGATTGT
TGGGAGGGATAAACTCAATGCACCAACACGCAAGCAGCCTAAGGTTGTGGTGGGAGAGATAGAGATTGAAGATGATGCTC
CAAAGAGGAAGCCATCATTGGAGGAAATTGATGCTCTGGAGGAGGCCCGCCTCGCAATCGAGTACATTGTAATCCCAGGT
GGAGAGCCCGTAGAACTCCTCCCAAGATGTTCAGAAATAGTTGCCCGGCAACTGGAGCTTGTTGAGAGCTACCAGCTCCT
GGCCGAAACCTTTGGAACTGACTCCAACTCGAGGTTGCAGATTCTTCCGGTGAAAATAACCAAGAAGAGCTCAAGCAAAG
GCAGTGCAGGATCGATGCCCAAGCAAGGCAGCTCTGACCTGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis