Browse Element(s) Details


OsAffx.16162.1.S1_at

Description tigr:9635.m00857
TID=OsAffx.16162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed
LOC_Os07g09010Os.49506.1.S1_at11/117+4695537..4697831nodulin family protein, putative, expressed
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16162.1.S1_at--504--7651Chr07:4676311..4676335 (25 bp)
GGGATATACCCAACAATTTTACAAG
LOC_Os07g08990
OsAffx.16162.1.S1_at--1022--10471Chr07:4676211..4676317 (25 bp)
TTACAAGGGTCATCTTTGTGCTCCT
LOC_Os07g08990
OsAffx.16162.1.S1_at--81--7831Chr07:4676204..4676228 (25 bp)
GGTCATCTTTGTGCTCCTCTTTGGT
LOC_Os07g08990
OsAffx.16162.1.S1_at--543--9551Chr07:4676187..4676211 (25 bp)
TCTTTGGTGCATCCGCTGTTCTTGT
LOC_Os07g08990
OsAffx.16162.1.S1_at--906--4971Chr07:4676179..4676203 (25 bp)
GCATCCGCTGTTCTTGTATTCACTG
LOC_Os07g08990
OsAffx.16162.1.S1_at--828--3871Chr07:4676172..4676196 (25 bp)
CTGTTCTTGTATTCACTGGAGCTAT
LOC_Os07g08990
OsAffx.16162.1.S1_at--985--10791Chr07:4676166..4676190 (25 bp)
TTGTATTCACTGGAGCTATGCCCTT
LOC_Os07g08990
OsAffx.16162.1.S1_at--612--131Chr07:4676162..4676186 (25 bp)
ATTCACTGGAGCTATGCCCTTCATA
LOC_Os07g08990
OsAffx.16162.1.S1_at--1117--8531Chr07:4676156..4676180 (25 bp)
TGGAGCTATGCCCTTCATATTCATC
LOC_Os07g08990
OsAffx.16162.1.S1_at--624--3691Chr07:4676151..4676175 (25 bp)
CTATGCCCTTCATATTCATCCAATA
LOC_Os07g08990
OsAffx.16162.1.S1_at--200--10531Chr07:4676137..4676161 (25 bp)
TTCATCCAATATGCCGAGGTGGTGT
LOC_Os07g08990
Target Sequence 
GGGATATACCCAACAATTTTACAAGGGTCATCTTTGTGCTCCTCTTTGGTGCATCCGCTGTTCTTGTATTCACTGGAGCT
ATGCCCTTCATATTCATCCAATATGCCGAGGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis