Browse Element(s) Details


Os.19410.1.S1_at

Description gb:AK111777.1
DB_XREF= gi:37988440
TID=Os.19410.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077D02, full insert sequence.
FL= gb:AK111777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0900011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed
LOC_Os07g09010Os.49506.1.S1_at11/117+4695537..4697831nodulin family protein, putative, expressed
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19410.1.S1_at--556--6731Chr07:4685417..4685441 (25 bp)
GTTCTATATGTTCTACGAGCGCTCC
LOC_Os07g09000
Os.19410.1.S1_at--415--1611Chr07:4685434..4685458 (25 bp)
AGCGCTCCGATTCCTTCTGGAACTT
LOC_Os07g09000
Os.19410.1.S1_at--1139--6111Chr07:4685492..4685516 (25 bp)
GAGTGTCATGAAGGAGTCTCCTCCA
LOC_Os07g09000
Os.19410.1.S1_at--749--1231Chr07:4685516..4685540 (25 bp)
AGTTCCTGAGGACCAGAACCCCTGG
LOC_Os07g09000
Os.19410.1.S1_at--58--5451Chr07:4685531..4685555 (25 bp)
GAACCCCTGGTGAATTATCTTTCAA
LOC_Os07g09000
Os.19410.1.S1_at--743--7671Chr07:4685596..4685620 (25 bp)
GGGTTTTTTCCAAGCCTAATTCATG
LOC_Os07g09000
Os.19410.1.S1_at--641--9691Chr07:4685632..4685656 (25 bp)
TACTTGTTCGCCGATCTGACCACGT
LOC_Os07g09000
Os.19410.1.S1_at--469--5851Chr07:4685649..4685673 (25 bp)
GACCACGTCAGTATTTATCTAGGTA
LOC_Os07g09000
Os.19410.1.S1_at--313--2851Chr07:4685761..4685785 (25 bp)
AAGTCTATTGTACCTTGCAGTGGGA
LOC_Os07g09000
Os.19410.1.S1_at--301--7671Chr07:4685782..4685806 (25 bp)
GGGATTTATCCACGTGCTTATTTAC
LOC_Os07g09000
Os.19410.1.S1_at--737--5211Chr07:4685833..4685857 (25 bp)
GAATTTATCAGTGTGTTCTACTTCT
LOC_Os07g09000
Target Sequence 
GTTCTATATGTTCTACGAGCGCTCCGATTCCTTCTGGAACTTTCCNATGGGGCAGCATCAGCCAGCCAAGCCATGGAGTG
TCATGAAGGAGTCTCCTCCAGTTCCTGAGGACCAGAACCCCTGGTGAATTATCTTTCAAGCAATCAAGCATTTNGGGTGT
TGTTTTATTTCATAATGAAAGGGTTTTTTCCAAGCCTAATTCATGTTGTACCANTTTTACTTGTTCGCCGATCTGACCAC
GTCAGTATTTATCTAGGTAAATCAGTAAAATGCCACTGTAAGTGGTGGTCTGATGGTAGTTATGAAAATGCCATCGACTT
CCNATGAGACTTTCAGTGGCATTTTTAAGTCTATTGTACCTTGCAGTGGGATTTATCCACGTGCTTATTTACCCCCTTCT
CTTTGGTAGTCAATAACTGAATTTATCAGTGTGTTCTACTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis