Browse Element(s) Details


Os.49506.1.S1_at

Description gb:AK062594.1
DB_XREF= gi:32972612
TID=Os.49506.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A06, full insert sequence.
FL= gb:AK062594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0901011/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed
LOC_Os07g09010Os.49506.1.S1_at11/117+4695537..4697831nodulin family protein, putative, expressed
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed
LOC_Os07g09030NANA7+4716943..4717257hypothetical protein
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49506.1.S1_at--812--7171Chr07:4697275..4697299 (25 bp)
GTCTGGAGGACGTGGAGATTCTACA
LOC_Os07g09010
Os.49506.1.S1_at--457--451Chr07:4697308..4697332 (25 bp)
ATCTACGCGAGGTTCCGCGACGGCG
LOC_Os07g09010
Os.49506.1.S1_at--1116--10751Chr07:4697488..4697512 (25 bp)
TTGACTTGGTCAATGATGACGTCAT
LOC_Os07g09010
Os.49506.1.S1_at--53--691Chr07:4697503..4697527 (25 bp)
ATGACGTCATCAGCGGTCACTGGTG
LOC_Os07g09010
Os.49506.1.S1_at--884--111Chr07:4697532..4697556 (25 bp)
ATTCTATCTACTCTGGCTTTGGCTG
LOC_Os07g09010
Os.49506.1.S1_at--154--10871Chr07:4697550..4697574 (25 bp)
TTGGCTGCTGACGTGGAATGGAAAT
LOC_Os07g09010
Os.49506.1.S1_at--774--5351Chr07:4697588..4697612 (25 bp)
GAAGATCTGGAAAAGCACAGCACGA
LOC_Os07g09010
Os.49506.1.S1_at--826--5071Chr07:4697607..4697631 (25 bp)
GCACGAAAGCGGCTGTAAATTTGGT
LOC_Os07g09010
Os.49506.1.S1_at--420--10311Chr07:4697683..4697707 (25 bp)
TTTCGGTTTGGCGAAATCGCATCGA
LOC_Os07g09010
Os.49506.1.S1_at--210--2111Chr07:4697729..4697753 (25 bp)
ACATGTATTGTATCCGTAACTTATA
LOC_Os07g09010
Os.49506.1.S1_at--46--1031Chr07:4697765..4697789 (25 bp)
AGGTTTGTAATTGGAAATTCCTCTG
LOC_Os07g09010
Target Sequence 
GTCTGGAGGACGTGGAGATTCTACAAGGGGGACATCTACGCGAGGTTCCGCGACGGCGACGGCGCCGTCGCCGGAGAGGG
AGGTGACGGCCGGTTGCCGGTGGACCAGCGGCGGCGGCCGCCGCCGCCGGAGGAGGAGGAGGAGTCAACGGCGGTCAACG
GANGGAAGGAGTGAGCCAGTGAGGAGGANGAGGAGGTGGGAGTNGTTGGTAGGTTGACTTGGTCAATGATGACGTCATCA
GCGGTCACTGGTGATGGNATTCTATCTACTCTGGCTTTGGCTGCTGACGTGGAATGGAAATTACAGCATTTACAGAAGAT
CTGGAAAAGCACAGCACGAAAGCGGCTGTAAATTTGGTTTCACCAAAGGAAATGCAAATATAAGTNTCTTACTTATTTGC
TTTGGAAATTTTCGGTTTGGCGAAATCGCATCGAATGTAAATATGAGTACTGAGTACATGTATTGTATCCGTAACTTATA
AAGAGTGACATAGGTTTGTAATTGGAAATTCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis