Browse Element(s) Details


Os.15252.2.S1_a_at

Description gb:CB650721
DB_XREF= gi:29645714
DB_XREF=OSJNEb15F08.r
CLONE=OSJNEb15F08
TID=Os.15252.2
CNT=10
FEA=EST
TIER=Stack
STK=8
UG=Os.15252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001D19, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0895011/11D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15252.2.S1_a_at--773--5391Chr07:4655821..4655845 (25 bp)
GAAGCTTTTTTGTTGCGTTCAATGG
LOC_Os07g08950
Os.15252.2.S1_a_at--1105--8451Chr07:4655850..4655874 (25 bp)
TGGCCTGGTAGCTGATGGAGTTATA
LOC_Os07g08950
Os.15252.2.S1_a_at--1082--7671Chr07:4656118..4656142 (25 bp)
GGGTATATCAGAAGCATCCGTCAAA
LOC_Os07g08950
Os.15252.2.S1_a_at--265--671Chr07:4656162..4656186 (25 bp)
ATGACTTGTCCATACCCGTAGAGAA
LOC_Os07g08950
Os.15252.2.S1_a_at--700--8251Chr07:4656315..4656339 (25 bp)
GGCACCTTGGTGATGGGAACCTGCA
LOC_Os07g08950
Os.15252.2.S1_a_at--995--8171Chr07:4656330..4656354 (25 bp)
GGAACCTGCATCTGAACATCTTATC
LOC_Os07g08950
Os.15252.2.S1_a_at--230--6351Chr07:4656471..4656495 (25 bp)
GATGCTGGCACAAATTGAACCATTT
LOC_Os07g08950
Os.15252.2.S1_a_at--1044--10231Chr07:4656493..4656517 (25 bp)
TTTGTCTACGAGTGGACCTCCAAAC
LOC_Os07g08950
Os.15252.2.S1_a_at--8--5331Chr07:4656987..4657011 (25 bp)
GAAGTTGCTCGACCCAAATTCAATC
LOC_Os07g08950
Os.15252.2.S1_a_at--1063--111Chr07:4657004..4657028 (25 bp)
ATTCAATCCTGAACCCCTACAAGGT
LOC_Os07g08950
Os.15252.2.S1_a_at--716--2131Chr07:4657035..4657059 (25 bp)
ACAGTCCGTCCTGTAGCTGGAAACG
LOC_Os07g08950
Target Sequence 
GAAGCTTTTTTGTTGCGTTCAATGGAAGATGGCCTGGTAGCTGATGGAGTTATAGCACAAGATATTAGCCAAGCCTCTAA
TTTTTGGAGAATTCGTGAGGGTATATCAGAAGCATCCGTCAAAGTTGGGGCTGTCTACAAGTATGACTTGTCCATACCCG
TAGAGAAGCTATATGATATTGTTGAAGAAATGCGCAGCCGTGTTGGTGATATGGGACAAGTATTGGGCTATGGGCACCTT
GGTGATGGGAACCTGCATCTGAACATCTTATCAACAAAGTACAGCGACAAGATGCTGGCACAAATTGAACCATTTGTCTA
CGAGTGGACCTCCAAACAGAGAGGGAGCATTAGTGCAGAGCATGGATTGGGTCTAATGAAAGCCGAGAAGATTCACTACA
GCAAGTCATCTGAGGCAGTGCAACTGATGGCTTCCATCAAGAAGTTGCTCGACCCAAATTCAATCCTGAACCCCTACAAG
GTTCTCCCACAGTCCGTCCTGTAGCTGGAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15252.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis