Browse Element(s) Details


Os.5867.1.S1_at

Description gb:AK059768.1
DB_XREF= gi:32969786
TID=Os.5867.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H01, full insert sequence.
FL= gb:AK103069.1 gb:AK059768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0896011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0000166molecular_functionnucleotide binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5867.1.S1_at--640--5831Chr07:4658209..4658233 (25 bp)
GACCTGCTCGCTTTGCTGGGAGTTA
LOC_Os07g08960
Os.5867.1.S1_at--874--1211Chr07:4658189..4658213 (25 bp)
AGTTACAGAGATAGGCCTGCCCCAT
LOC_Os07g08960
Os.5867.1.S1_at--785--5051Chr07:4658147..4658171 (25 bp)
GCAGCAGCACGCACTTATGATGACC
LOC_Os07g08960
Os.5867.1.S1_at--804--6151Chr07:4658112..4658136 (25 bp)
GAGGTTACTTCGGAGCATTGCAGAA
LOC_Os07g08960
Os.5867.1.S1_at--333--10191Chr07:4658072..4658096 (25 bp)
TATATGTTCCAGTTCGCAGTTCCTA
LOC_Os07g08960
Os.5867.1.S1_at--792--5711Chr07:4658018..4658042 (25 bp)
GACTCTTTGAGTGTTGTTCTTCCAT
LOC_Os07g08960
Os.5867.1.S1_at--941--6631Chr07:4658006..4658030 (25 bp)
GTTGTTCTTCCATGCAGTTTGTTTA
LOC_Os07g08960
Os.5867.1.S1_at--757--6611Chr07:4657939..4657963 (25 bp)
GTTGGCACATTAAGCTCCAGGCAGT
LOC_Os07g08960
Os.5867.1.S1_at--606--10591Chr07:4657908..4657932 (25 bp)
TTCTGATTCCCTGTTATCGTGGTAC
LOC_Os07g08960
Os.5867.1.S1_at--155--7851Chr07:4657888..4657912 (25 bp)
GGTACTGTGTAATTACCCTCCAGTG
LOC_Os07g08960
Os.5867.1.S1_at--105--9771Chr07:4657860..4657884 (25 bp)
TAATCGTGTTCCGAGTGTGCTGTCT
LOC_Os07g08960
Target Sequence 
GACCTGCTCGCTTTGCTGGGAGTTACAGAGATAGGCCTGCCCCATATGATCGTCCCAGCCGGGCAGCAGCACGCACTTAT
GATGACCGCTACTGATGGAGGTTACTTCGGAGCATTGCAGAAGACCAGAATTACAAATATATGTTCCAGTTCGCAGTTCC
TACTTTATTTGCCTTCCTGTATTAGTACATCGACTCTTTGAGTGTTGTTCTTCCATGCAGTTTGTTTAATTACTAGTGAG
ACAATAAGGCAGTTCTTGAATTGTTAGTATGTTGGCACATTAAGCTCCAGGCAGTGGGTGATTCTGATTCCCTGTTATCG
TGGTACTGTGTAATTACCCTCCAGTGTAATAATCGTGTTCCGAGTGTGCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis