Browse Element(s) Details


Os.53401.1.S1_at

Description gb:AK072456.1
DB_XREF= gi:32982479
TID=Os.53401.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023117O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117O13, full insert sequence.
FL= gb:AK072456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08890Os.50622.1.S1_at10/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890OsAffx.21785.2.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08890Os.53962.1.S1_at1/117+4616966..4621054NB-ARC domain containing protein, expressed
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53401.1.S1_at--814--2671Chr07:4642305..4642329 (25 bp)
AAGCGCTAGACATCGAGGCAGCCGC
LOC_Os07g08930
Os.53401.1.S1_at--457--2671Chr07:4642382..4642406 (25 bp)
AAGCGCGTTTCCAAGAGCGTGCAGA
LOC_Os07g08930
Os.53401.1.S1_at--293--4491Chr07:4642508..4642532 (25 bp)
GCCGGCGGCGCACTTTATAGTGTAA
LOC_Os07g08930
Os.53401.1.S1_at--877--9831Chr07:4642530..4642554 (25 bp)
TAAACCTGGCATTGATTTGCCTCGG
LOC_Os07g08930
Os.53401.1.S1_at--47--7031Chr07:4642608..4642632 (25 bp)
GTAAACTCGCCGTAACCAAGGTGCA
LOC_Os07g08930
Os.53401.1.S1_at--972--3671Chr07:4642675..4642699 (25 bp)
CTTTCTGCTCCGTATTTCGATGATG
LOC_Os07g08930
Os.53401.1.S1_at--607--631Chr07:4642697..4642721 (25 bp)
ATGCTTCCTGCTGCATCGTTGGAAT
LOC_Os07g08930
Os.53401.1.S1_at--638--5271Chr07:4642718..4642742 (25 bp)
GAATGGGTTTTCCTCTTGATCTTCC
LOC_Os07g08930
Os.53401.1.S1_at--977--6411Chr07:4642735..4642759 (25 bp)
GATCTTCCTGGTATTTGCCTGTGCC
LOC_Os07g08930
Os.53401.1.S1_at--943--3911Chr07:4642764..4642788 (25 bp)
CGGCCTACCTGTCGCTGGTATATAT
LOC_Os07g08930
Os.53401.1.S1_at--933--1691Chr07:4642807..4642831 (25 bp)
ACCAAAGGCCCATGTACGTGTGTGA
LOC_Os07g08930
Target Sequence 
AAGCGCTAGACATCGAGGCAGCCGCAGCTGGTGATCACCAGGTGGCGCGCGACGACGACGACGCCGACGCCGACGCGAAG
CGCGTTTCCAAGAGCGTGCAGACGGTGTCCCTCTTCGCGGCGTCGGCGTCGCTTTTGCTCTTCGCCAACCTCACGGCGGC
GGGCAAAGCACCGACGACGACACCGCCGCCGCCGCGATTGCCCGCCGGCGGCGCACTTTATAGTGTAAACCTGGCATTGA
TTTGCCTCGGCCTGCTCACGAGCCTCGCTCTCTCCATCTTCTCCATCCTGGCACCGGCCGCCCGTAAACTCGCCGTAACC
AAGGTGCAGAAGAGGGGAATGGTGATGGCCGTGGCGTTCGTTCTCGTCTCCTTTCTGCTCCGTATTTCGATGATGCTTCC
TGCTGCATCGTTGGAATGGGTTTTCCTCTTGATCTTCCTGGTATTTGCCTGTGCCGAGGCGGCCTACCTGTCGCTGGTAT
ATATGAGACATGTTGTGGATGAACCAAAGGCCCATGTACGTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis