Browse Element(s) Details


Os.53962.1.S1_at

Description gb:AK101053.1
DB_XREF= gi:32986262
TID=Os.53962.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033015D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033015D22, full insert sequence.
FL= gb:AK101053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g204201/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os10g111101/11expressed protein
LOC_Os11g057601/11Serine carboxypeptidase S28 family protein, expressed
LOC_Os06g216201/11T-complex protein 1, eta subunit, putative, expressed
LOC_Os12g222841/11ABC-2 type transporter family protein, expressed
LOC_Os01g528641/11integral membrane family protein, putative, expressed
LOC_Os01g677101/11hypothetical protein
LOC_Os12g395301/11hypothetical protein
LOC_Os07g088901/11NB-ARC domain containing protein, expressed
LOC_Os08g398101/11transposon protein, putative, unclassified, expressed
LOC_Os05g185401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0010025biological_processwax biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0005764cellular_componentlysosome
GO:0009706cellular_componentchloroplast inner membrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0005515molecular_functionprotein binding
GO:0008233molecular_functionpeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53962.1.S1_at--23--7293Chr05:22113502..22113526 (25 bp)
GTGCCAAATCTGTCATGTAGCATTT
NONE
Os.53962.1.S1_at--434--36553Chr12:4443948..4443993 (25 bp)
CTTAGCCCTCAAATAACCCAATCTG
NONE
Os.53962.1.S1_at--404--7715Chr12:24286040..24286064 (25 bp)
GGGTGCTACTCAGGTTACTGCAACC
NONE
Os.53962.1.S1_at--767--911Chr05:22113681..22113705 (25 bp)
AGGCTACATACCCTTTTACATGTTG
NONE
Os.53962.1.S1_at--819--3451Chr05:22113768..22113792 (25 bp)
CAGTGACCAAGGGTACTATCTTCTT
NONE
Os.53962.1.S1_at--299--212Chr05:22113794..22113818 (25 bp)
ATTTGCTTGCAGTCTCCCATTGTTT
NONE
Os.53962.1.S1_at--726--4751Chr05:22113819..22113843 (25 bp)
GCTGAGACCATCAATACTCTTGCAT
NONE
Os.53962.1.S1_at--707--8171Chr05:22113869..22113893 (25 bp)
GGAACTGCAATACTGGACGAGGCTT
NONE
Os.53962.1.S1_at--723--5771Chr05:22113884..22113908 (25 bp)
GACGAGGCTTGTTTGAGTTTTCTTT
NONE
Os.53962.1.S1_at--952--91Chr05:22113961..22113985 (25 bp)
ATTCCCGAGAGCATGTCTGTATGGC
NONE
Os.53962.1.S1_at--1122--10093Chr05:22113980..22114004 (25 bp)
TATGGCACCAAACTGTTCACCTGAG
NONE
Target Sequence 
GTGCCAAATCTGTCATGTAGCATTTGTCTTTTTTTTTTTACCCGGCCTCTACATCCAACTGGATATATGCAACCTTTTTA
AATTAAGAACTTAGCCCTCAAATAACCCAATCTGAAATTCGCTCCTATAGCGATTTAAATTCAGGACCTTGGGGTGCTAC
TCAGGTTACTGCAACCATTAGGCTACATACCCTTTTACATGTTGCATTTGTCTAGATTATTGCATTTATAAGCAGTAAAT
CTTTTTCNGAGCAAATAGCATTTGTGCAGTGACCAAGGGTACTATCTTCTTGATTTGCTTGCAGTCTCCCATTGTTTGCT
GAGACCATCAATACTCTTGCATGGATGATGGTTCAATTGAATAATTAGGAACTGCAATACTGGACGAGGCTTGTTTGAGT
TTTCTTTAGTTCTCTTCAATAAGTTACCTCTTTAATTATATGGCTTCAAACTTTTNCATATTCCCGAGAGCATGTCTGTA
TGGCACCAAACTGTTCACCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis