Browse Element(s) Details


Os.12261.1.S1_a_at

Description gb:AY256847.1
DB_XREF= gi:32442210
GEN=CK1
TID=Os.12261.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12261 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) CIPK-like protein (CK1) mRNA, complete cds.
PROD=CIPK-like protein
FL= gb:AK111920.1 gb:AY256847.1 gb:AK111929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2038011/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009651biological_processresponse to salt stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12261.1.S1_a_at--360--5991Chr03:11506340..11506457 (25 bp)
GAGACTCCGAAGACCGGCATGTCAA
LOC_Os03g20380
Os.12261.1.S1_a_at--709--2551Chr03:11506309..11506333 (25 bp)
AACTGAAGATCAGCCTACCTCTATG
LOC_Os03g20380
Os.12261.1.S1_a_at--453--4431Chr03:11506297..11506321 (25 bp)
GCCTACCTCTATGAACGCGTTTGAA
LOC_Os03g20380
Os.12261.1.S1_a_at--96--5451Chr03:11506285..11506309 (25 bp)
GAACGCGTTTGAACTCATTTCACTG
LOC_Os03g20380
Os.12261.1.S1_a_at--932--1251Chr03:11506056..11506080 (25 bp)
AGATTCACATCACAATGTCCTCCAA
LOC_Os03g20380
Os.12261.1.S1_a_at--401--2691Chr03:11506007..11506031 (25 bp)
AAGCTGCAAAGCCACTTGGATTTGA
LOC_Os03g20380
Os.12261.1.S1_a_at--695--8711Chr03:11505509..11505533 (25 bp)
TGTCGACCCAGCTCAAGGACGTGGT
LOC_Os03g20380
Os.12261.1.S1_a_at--78--4011Chr03:11505443..11505467 (25 bp)
CGTGAACGTGGTTTTTGCCATGGCT
LOC_Os03g20380
Os.12261.1.S1_a_at--624--7891Chr03:11505407..11505431 (25 bp)
GGTTCTTCGTGTACATAGCTGCTCT
LOC_Os03g20380
Os.12261.1.S1_a_at--269--10011Chr03:11505392..11505416 (25 bp)
TAGCTGCTCTGCCATCATCAATGGG
LOC_Os03g20380
Os.12261.1.S1_a_at--26--7751Chr03:11505368..11505392 (25 bp)
GGTGTTCGCCGTAGAGTAGCTTTTT
LOC_Os03g20380
Target Sequence 
GAGACTCCGAAGACCGGCATGTCAAAGAAGAAACTGAAGATCAGCCTACCTCTATGAACGCGTTTGAACTCATTTCACTG
AATCAGGCNCTGAATCTGGACAATTTGTTCGAGGCAAAAAAGGAGTATAAAAGAGAGACAAGATTCACATCACAATGTCC
TCCAAAAGAAATTATCACCAAGATTGAAGAAGCTGCAAAGCCACTTGGATTTGATATTCAAAAGAAAAATTACAAGATGC
GNATGGAGAACCTGAAAGCAGGTAGAAAAGGCAATCTCAATGTTGCAACTGAGGTTTTCCAAGTAGCTCCATCCTTACAT
GTGGTTGAGCTCAAGAAGGCAAAGGGGGACACTCTGGAGTTCCAAAAGTTCTACAGAACCCTGTCGACCCAGCTCAAGGA
CGTGGTCTGGAAGTGCGACGGCGAGGTCGAAGGCAACGGCGCCGCGGCGTGAACGTGGTTTTTGCCATGGCTTTCGGGGC
ACCGGTTCTTCGTGTACATAGCTGCTCTGCCATCATCAATGGGGTGTTCGCCGTAGAGTAGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12261.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis