Browse Element(s) Details


OsAffx.25163.1.S1_at

Description tigr:9631.m02018
TID=OsAffx.25163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2035011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25163.1.S1_at--469--4671Chr03:11497472..11497496 (25 bp)
GCGGTCCGAGGAGCACTACCCGAGT
LOC_Os03g20350
OsAffx.25163.1.S1_at--288--1811Chr03:11497489..11497513 (25 bp)
ACCCGAGTCCTGACTCCGTGCTGGA
LOC_Os03g20350
OsAffx.25163.1.S1_at--186--91Chr03:11497532..11497556 (25 bp)
ATTCCCATGCAGGAAACGGTCGTCT
LOC_Os03g20350
OsAffx.25163.1.S1_at--945--5531Chr03:11497544..11497568 (25 bp)
GAAACGGTCGTCTCCCTGCACGGAT
LOC_Os03g20350
OsAffx.25163.1.S1_at--940--3331Chr03:11497562..11497586 (25 bp)
CACGGATCTCGATGCAGATCGCAAG
LOC_Os03g20350
OsAffx.25163.1.S1_at--860--5031Chr03:11497575..11497599 (25 bp)
GCAGATCGCAAGCTCAGCTGCGGTA
LOC_Os03g20350
OsAffx.25163.1.S1_at--362--6391Chr03:11497612..11497636 (25 bp)
GATCGAAGATCGTGAAGCCCTCTCG
LOC_Os03g20350
OsAffx.25163.1.S1_at--1016--1811Chr03:11497638..11497788 (25 bp)
ACGCTCGTTTTCTCGGGCGACTATT
LOC_Os03g20350
OsAffx.25163.1.S1_at--216--8331Chr03:11497779..11497803 (25 bp)
GGCGACTATTGCAAGATCAAACCAT
LOC_Os03g20350
OsAffx.25163.1.S1_at--196--4431Chr03:11497857..11497881 (25 bp)
GCCATACCGAGGTGGATACCGCCGC
LOC_Os03g20350
OsAffx.25163.1.S1_at--1006--4711Chr03:11498045..11498069 (25 bp)
GCTGGAGCGCGCAATCCTGCACGAC
LOC_Os03g20350
Target Sequence 
GCGGTCCGAGGAGCACTACCCGAGTCCTGACTCCGTGCTGGACGCCATCACCTCCCCGAGATTCCCATGCAGGAAACGGT
CGTCTCCCTGCACGGATCTCGATGCAGATCGCAAGCTCAGCTGCGGTACCCCCGCCGTCGGATCGAAGATCGTGAAGCCC
TCTCGCACGCTCGTTTTCTCGGGCGACTATTGCAAGATCAAACCATGCAACGAGCTGCACGCCGTCGCCATGTACCACCA
CCCGGTGGTGGCCATCGAGGCCATACCGAGGTGGATACCGCCGCCGCCGCCGCCGTCGTCGGAGATCAGCTGGCGGCACC
GGCGACGGTGGGGCCTCGAGGCGGCGGCGGCATCCGGGCGGAGCCGCGCGATGGCGGAGAGCGTGGGGGAGGTGTGGGGG
CATGGCGCCGACGAGGAGCGGCACGAGGCCGGCCGTGTCGGCGCGGCGCTGGAGCGCGCAATCCTGCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis