Browse Element(s) Details


Os.8532.1.S1_at

Description gb:AK101800.1
DB_XREF= gi:32987009
TID=Os.8532.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066I11, full insert sequence.
FL= gb:AK101800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2034011/11SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004679molecular_functionAMP-activated protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8532.1.S1_at--644--3851Chr03:11490585..11490609 (25 bp)
CTGATGAAAGTTGTGCACGGCCCCA
LOC_Os03g20340
Os.8532.1.S1_at--259--9711Chr03:11490621..11490645 (25 bp)
TCAACCACCTCTTCATCGAGAAAGG
LOC_Os03g20340
Os.8532.1.S1_at--529--7791Chr03:11490674..11490698 (25 bp)
GGTCTAACCCACAGGTTTGAGTCCA
LOC_Os03g20340
Os.8532.1.S1_at--166--7271Chr03:11490694..11490718 (25 bp)
GTCCAAATATGTAACCGTCGTCCTG
LOC_Os03g20340
Os.8532.1.S1_at--808--7191Chr03:11490710..11490734 (25 bp)
GTCGTCCTGTATAAGCCCATTGAAC
LOC_Os03g20340
Os.8532.1.S1_at--753--2531Chr03:11490775..11490799 (25 bp)
AACTCACTGCGGAACCAACAAGGGC
LOC_Os03g20340
Os.8532.1.S1_at--842--6211Chr03:11490800..11490824 (25 bp)
GAGGCCTCGCTTCCTGTAAAAGCAC
LOC_Os03g20340
Os.8532.1.S1_at--441--2351Chr03:11490818..11490842 (25 bp)
AAAGCACTTCAGGTTCAGGAGTATT
LOC_Os03g20340
Os.8532.1.S1_at--722--751Chr03:11490882..11490906 (25 bp)
ATGTACCATCATGATGTCTGGCGCC
LOC_Os03g20340
Os.8532.1.S1_at--183--771Chr03:11490895..11490919 (25 bp)
ATGTCTGGCGCCCTGGTTTGTTTAC
LOC_Os03g20340
Os.8532.1.S1_at--1124--1871Chr03:11491086..11491110 (25 bp)
ACGATGCTGTTGTTTGTTCTTAATG
LOC_Os03g20340
Target Sequence 
CTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTG
GTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAG
TCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCAC
TTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG
CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTNNNATCGATGCTCA
AGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGA
TCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis