Browse Element(s) Details


Os.39470.1.A1_x_at

Description gb:CF308779
DB_XREF= gi:33680540
DB_XREF=ABF--02-L16.b1
CLONE=ABF--02-L16
TID=Os.39470.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g203801/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009651biological_processresponse to salt stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39470.1.A1_x_at--389--8551NONE
TGGATGAGCTTGTCCCCGGGTTAGT
NONE
Os.39470.1.A1_x_at--908--671NONE
ATGAGCTTGTCCCCGGGTTAGTTCA
NONE
Os.39470.1.A1_x_at--291--10551NONE
TTCATTTATTTTGTGGCCCCGGAAG
NONE
Os.39470.1.A1_x_at--651--9531NONE
TCATTTATTTTGTGGCCCCGGAAGG
NONE
Os.39470.1.A1_x_at--348--1011NONE
AGGTTGTAACGGGACACAATCAAAT
NONE
Os.39470.1.A1_x_at--973--7311NONE
TTGTAACGGGACACAATCAAATGCC
NONE
Os.39470.1.A1_x_at--485--7051NONE
GTAACGGGACACAATCAAATGCCGC
NONE
Os.39470.1.A1_x_at--1070--2571NONE
AACGGGACACAATCAAATGCCGCAA
NONE
Os.39470.1.A1_x_at--237--7631NONE
GGGACACAATCAAATGCCGCAAAGC
NONE
Os.39470.1.A1_x_at--516--1911NONE
ACGGGGTGACAGTTTGTGAGTTTCA
NONE
Os.39470.1.A1_x_at--827--8671Chr03:11505147..11505171 (25 bp)
TGTGAGTTTCAAACAACATTTGAAT
LOC_Os03g20380
Target Sequence 
TGGATGAGCTTGTCCCCGGGTTAGTTCATTTATTTTGTGGCCCCGGAAGGTTGTAACGGGACACAATCAAATGCCGCAAA
GCAACGGGGTGACAGTTTGTGAGTTTCAAACAACATTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39470.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis