Browse Element(s) Details


OsAffx.25164.1.S1_at

Description tigr:9631.m02025
TID=OsAffx.25164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2039011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25164.1.S1_at--1094--9051Chr03:11520324..11520348 (25 bp)
TGCATCGATCTCAGGTTTGCAGTCT
LOC_Os03g20390
OsAffx.25164.1.S1_at--281--5031Chr03:11520342..11520366 (25 bp)
GCAGTCTTCTGCTCGAACAGATCTA
LOC_Os03g20390
OsAffx.25164.1.S1_at--220--9631Chr03:11520403..11520427 (25 bp)
TCAGATTTTACATCACGGTCGCAAA
LOC_Os03g20390
OsAffx.25164.1.S1_at--94--2351Chr03:11520426..11520450 (25 bp)
AAAGCTAGCCAAGCAGCATCACGCT
LOC_Os03g20390
OsAffx.25164.1.S1_at--731--1831Chr03:11520446..11520470 (25 bp)
ACGCTACCCGAATATGCCCAACGAT
LOC_Os03g20390
OsAffx.25164.1.S1_at--980--791Chr03:11520471..11520495 (25 bp)
ATGGGCCGACTGTAACATGCTGACA
LOC_Os03g20390
OsAffx.25164.1.S1_at--639--8951Chr03:11520491..11520583 (25 bp)
TGACATCCAGCACAGCGGGCCAGAA
LOC_Os03g20390
OsAffx.25164.1.S1_at--1155--831Chr03:11520589..11520613 (25 bp)
ATGGACAACTGGACAAGACGGCTGC
LOC_Os03g20390
OsAffx.25164.1.S1_at--1066--2751Chr03:11520603..11520627 (25 bp)
AAGACGGCTGCCACGTTCAGTGAGG
LOC_Os03g20390
OsAffx.25164.1.S1_at--861--8211Chr03:11520626..11520650 (25 bp)
GGCAATGTACGAGAATCCCATCATG
LOC_Os03g20390
OsAffx.25164.1.S1_at--92--9331Chr03:11520641..11520665 (25 bp)
TCCCATCATGGCGTTCAACTATACT
LOC_Os03g20390
Target Sequence 
TGCATCGATCTCAGGTTTGCAGTCTTCTGCTCGAACAGATCTACGCCCAGCCACAAGCCGGTACAGACGGATAAAATGTT
CAGATTTTACATCACGGTCGCAAAAGCTAGCCAAGCAGCATCACGCTACCCGAATATGCCCAACGATATGGGCCGACTGT
AACATGCTGACATCCAGCACAGCGGGCCAGAATTGCAATGGACAACTGGACAAGACGGCTGCCACGTTCAGTGAGGCAAT
GTACGAGAATCCCATCATGGCGTTCAACTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis