Browse Element(s) Details


Os.53074.1.S1_at

Description gb:AK070706.1
DB_XREF= gi:32980730
TID=Os.53074.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063B10, full insert sequence.
FL= gb:AK070706.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2033011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20300Os.16992.1.S1_at10/113+11447889..11454565Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
LOC_Os03g20310Os.15238.1.S1_at11/113+11454734..11460085Transcription factor HBP-1b, putative, expressed
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed
LOC_Os03g20340Os.8532.1.S1_at11/113+11486413..11491141SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53074.1.S1_at--952--591Chr03:11477194..11477218 (25 bp)
ATGCCGTTCCAGAGCGTGTACGACC
LOC_Os03g20330
Os.53074.1.S1_at--12--7451Chr03:11477209..11477233 (25 bp)
GTGTACGACCATGGGAGCTTGCTAT
LOC_Os03g20330
Os.53074.1.S1_at--218--10011Chr03:11477263..11477287 (25 bp)
TAGCTACATCGATCGGAGCTCCGTT
LOC_Os03g20330
Os.53074.1.S1_at--431--591Chr03:11477297..11477321 (25 bp)
ATGCCACACCACCATGGATACGAGT
LOC_Os03g20330
Os.53074.1.S1_at--401--1791Chr03:11477328..11477352 (25 bp)
ACCGTATATATACTGCTTTCTGCTG
LOC_Os03g20330
Os.53074.1.S1_at--137--10591Chr03:11477345..11477369 (25 bp)
TTCTGCTGTGCATGTACGCTTGCTT
LOC_Os03g20330
Os.53074.1.S1_at--1015--1831Chr03:11477360..11477384 (25 bp)
ACGCTTGCTTCTGCCTTAGTTATTG
LOC_Os03g20330
Os.53074.1.S1_at--1145--10831Chr03:11477382..11477406 (25 bp)
TTGGTTCGATCATCTTGTACTTCCC
LOC_Os03g20330
Os.53074.1.S1_at--371--9891Chr03:11477399..11477423 (25 bp)
TACTTCCCTTGTACGATCATACTAA
LOC_Os03g20330
Os.53074.1.S1_at--777--991Chr03:11477445..11477469 (25 bp)
AGGTTTGTAATTATGCGTTCGCTGT
LOC_Os03g20330
Os.53074.1.S1_at--116--6711Chr03:11477461..11477485 (25 bp)
GTTCGCTGTCTCAACTTTTAACTGA
LOC_Os03g20330
Target Sequence 
ATGCCGTTCCAGAGCGTGTACGACCATGGGAGCTTGCTATACGGTCAAGACTACTGGTAGGCTGGTAGCTAGCTACATCG
ATCGGAGCTCCGTTTCCTTCTACATGCCACACCACCATGGATACGAGTATATATACCGTATATATACTGCTTTCTGCTGT
GCATGTACGCTTGCTTCTGCCTTAGTTATTGGTTCGATCATCTTGTACTTCCCTTGTACGATCATACTAATATGTTGTTA
ATATAGAGGAGAGGTTTGTAATTATGCGTTCGCTGTCTCAACTTTTAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis