Browse Element(s) Details


Os.15238.1.S1_at

Description gb:AB051294.1
DB_XREF= gi:17025917
GEN=OsNIF1
TID=Os.15238.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15238 (NCBI UniGene Cluster)
DEF=Oryza sativa OsNIF1 mRNA for bZIP transcription factor, complete cds.
PROD=bZIP transcription factor
FL= gb:AB051294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2031011/11Transcription factor HBP-1b, putative, expressed
LOC_Os05g114281/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20270Os.54672.1.S1_at1/113+11438721..11439880Eukaryotic aspartyl protease family protein
LOC_Os03g20280OsAffx.26607.2.S1_at10/113+11440549..11442303hypothetical protein
LOC_Os03g20280OsAffx.22759.2.S1_at1/113+11440549..11442303hypothetical protein
LOC_Os03g20290Os.54672.1.S1_at10/113+11446469..11447983Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g20300Os.16992.1.S1_at10/113+11447889..11454565Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor, putative, expressed
LOC_Os03g20310Os.15238.1.S1_at11/113+11454734..11460085Transcription factor HBP-1b, putative, expressed
LOC_Os03g20320OsAffx.12950.1.S1_at11/113+11467013..11467396hypothetical protein
LOC_Os03g20330Os.53074.1.S1_at11/113+11476720..11477510VQ motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15238.1.S1_at--637--1291Chr03:11455865..11455889 (25 bp)
AGATGCTCTATCACAGGGAATGGAA
LOC_Os03g20310
Os.15238.1.S1_at--761--4631Chr03:11455840..11455864 (25 bp)
GCGTTGCAACAATCCTTGGCAGATA
LOC_Os03g20310
Os.15238.1.S1_at--619--10851Chr03:11455800..11455824 (25 bp)
TTGGTCCATCAGGATCTTCAGGGAA
LOC_Os03g20310
Os.15238.1.S1_at--6--5491Chr03:11455434..11455458 (25 bp)
GACAATTTGCGGCAGCAGACTTTAC
LOC_Os03g20310
Os.15238.1.S1_at--188--3152Chr05:6450055..6450074 (20 bp)
AATTCTGACAATCCGACAAGCTGCC
LOC_Os05g11428
Os.15238.1.S1_at--888--4191Chr03:11455373..11455397 (25 bp)
CCCGTGCTCTACTTGCAATACATGA
LOC_Os03g20310
Os.15238.1.S1_at--259--731Chr03:11455352..11455376 (25 bp)
ATGATTACTTCTCACGTTTGCGTGC
LOC_Os03g20310
Os.15238.1.S1_at--934--3851Chr03:11455326..11455350 (25 bp)
CTGAGTTCTCTCTGGCTTGCTAGGC
LOC_Os03g20310
Os.15238.1.S1_at--504--7711Chr03:11455281..11455305 (25 bp)
GGGTGCATCACCGTTAATGCTTCAT
LOC_Os03g20310
Os.15238.1.S1_at--912--3411Chr03:11455206..11455230 (25 bp)
CAGAAGATTGGTGGCTCAGTTCCCT
LOC_Os03g20310
Os.15238.1.S1_at--505--1231Chr03:11455189..11455213 (25 bp)
AGTTCCCTCGGCACAAGTTGTATTG
LOC_Os03g20310
Target Sequence 
AGATGCTCTATCACAGGGAATGGAAGCGTTGCAACAATCCTTGGCAGATACGTTGGCCGGGTCCCTTGGTCCATCAGGAT
CTTCAGGGAACGTGGCAAACTACATGGGTCAAATGGCTATGGCCATGGGCAAACTTGGGACCCTTGAGAATTTCCTCCGT
CAGGCTGACAATTTGCGGCAGCAGACTTTACATCAAATGCAGCGAATTCTGACAATCCGACAAGCTGCCCGTGCTCTACT
TGCAATACATGATTACTTCTCACGTTTGCGTGCCCTGAGTTCTCTCTGGCTTGCTAGGCCACGGGAGTAACAACACATAG
GGTGCATCACCGTTAATGCTTCATGAACTGATCTGGGAGGAACGGCGGAGCGGGACTGATTGCGGATGCATTTGCAGAAG
ATTGGTGGCTCAGTTCCCTCGGCACAAGTTGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis