Browse Element(s) Details


OsAffx.22759.2.S1_at

Description gb:NM_184513.1
DB_XREF= gi:34896115
GEN=P0701D05.12
TID=OsAffx.22759.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0701D05.12 (P0701D05.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g159601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g202801/11hypothetical protein
LOC_Os06g221801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g070901/11hypothetical protein
LOC_Os07g183201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15940OsAffx.21921.1.S1_at1/119+9739076..9741224retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g15950OsAffx.17724.1.S1_at11/119+9741900..9745357hypothetical protein
LOC_Os09g15960OsAffx.22759.1.S1_at5/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15960OsAffx.22759.2.S1_at1/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15970OsAffx.22240.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.10020.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.8338.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15980Os.26963.1.A1_at11/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.11244.1.S1_at1/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.19810.4.S1_s_at1/119+9767948..9774758expressed protein
LOC_Os09g16000OsAffx.17726.1.S1_at11/119+9776526..9779697Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22759.2.S1_at--919--9491Chr01:3382013..3382037 (25 bp)
TCTCCTCTGTTTCCGAGCAGGAGGA
NONE
OsAffx.22759.2.S1_at--1144--6251Chr01:3381933..3381957 (25 bp)
GATGTGGTGAATGTGGCCGTGCCCG
NONE
OsAffx.22759.2.S1_at--1068--911Chr01:3381901..3381925 (25 bp)
AGGCTATGACAGGAGCGCGGTCGAC
NONE
OsAffx.22759.2.S1_at--954--4131Chr01:3381631..3381910 (25 bp)
CGCGGTCGACGGCAATGTACATGAT
NONE
OsAffx.22759.2.S1_at--402--99718Chr12:14551370..14551395 (25 bp)
TACCTTCAAACGCATCCGGTCTCAT
NONE
OsAffx.22759.2.S1_at--669--1833Chr01:29826332..29826673 (25 bp)
ACGCATCCGGTCTCATATCCAAATT
NONE
OsAffx.22759.2.S1_at--362--39713Chr12:18474105..18474125 (21 bp)
CGGTCTCATATCCAAATTCATCTCG
NONE
OsAffx.22759.2.S1_at--136--1337Chr12:7751609..7752039 (25 bp)
ATTCATCTCGAGGATCATCAACCGC
NONE
OsAffx.22759.2.S1_at--645--10853Chr04:30628622..30629135 (25 bp)
TTGGTAGCCACGTCGTAAATGTCAC
NONE
OsAffx.22759.2.S1_at--844--1691Chr01:3380892..3380916 (25 bp)
AGCCACGTCGTAAATGTCACACTCG
NONE
OsAffx.22759.2.S1_at--214--7051Chr01:3380883..3380907 (25 bp)
GTAAATGTCACACTCGATCAAAACG
NONE
Target Sequence 
TCTCCTCTGTTTCCGAGCAGGAGGAGAGCGCTGGAGGGTGGGGCCCCGGGGTAGAGGGAGGGGGTGCCAGCGCAATTGGG
GATGTGGTGAATGTGGCCGTGCCCGGCTGGCCAGGCTATGACAGGAGCGCGGTCGACGGCAATGTACATGATTGGTATAT
AGATGATGAGGACATCACTTCATCGGATACGCTCATAACTTCACACGTTACAATGATAATTCCAAGTCCAAGTCCAGTTC
GGCCTTCGGAGACAGTACTGACTTCAAACGGACCTAGCGCCTTCATGCCAACTCTGATTTGGGTGATCTTGGACTTCGTG
GAAAGCTTATCTCGCTACCTTCAAACGCATCCGGTCTCATATCCAAATTCATCTCGAGGATCATCAACCGCGCGTCACGG
TTGGTACGACATCGTTTGTGGTGTACCGATTGCACGGCATCCTGGACTTGTTCTGGTTGGTAGCCACGTCGTAAATGTCA
CACTCGATCAAAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22759.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis