Browse Element(s) Details


OsAffx.17726.1.S1_at

Description tigr:9637.m01332
TID=OsAffx.17726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1600011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15960OsAffx.22759.1.S1_at5/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15960OsAffx.22759.2.S1_at1/119+9752018..9754524retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15970OsAffx.22240.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.10020.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.8338.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15980Os.26963.1.A1_at11/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.11244.1.S1_at1/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.19810.4.S1_s_at1/119+9767948..9774758expressed protein
LOC_Os09g16000OsAffx.17726.1.S1_at11/119+9776526..9779697Leucine Rich Repeat family protein
LOC_Os09g16010OsAffx.6291.1.S1_at11/119+9780579..9782841BURP domain containing protein, expressed
LOC_Os09g16020NANA9+9784871..9785143hypothetical protein
LOC_Os09g16030OsAffx.29866.1.S1_at11/119+9789701..9791206Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os09g16040NANA9+9795728..9797952retrotransposon protein, putative, unclassified
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17726.1.S1_at--342--2291Chr09:9779162..9779186 (25 bp)
AAATGTGCTGCTTGCGAAGCCTTGA
LOC_Os09g16000
OsAffx.17726.1.S1_at--9--2831Chr09:9779216..9779240 (25 bp)
AAGTTCTGCCCTTGTTTGTTGGAGC
LOC_Os09g16000
OsAffx.17726.1.S1_at--186--8731Chr09:9779339..9779363 (25 bp)
TGTCATGCTGTCCTGAAATCCGTGA
LOC_Os09g16000
OsAffx.17726.1.S1_at--920--5571Chr09:9779353..9779377 (25 bp)
GAAATCCGTGAGTTACCTTCATCTA
LOC_Os09g16000
OsAffx.17726.1.S1_at--188--451Chr09:9779373..9779397 (25 bp)
ATCTATCTCCGGTCTTGATGAACTT
LOC_Os09g16000
OsAffx.17726.1.S1_at--323--1571Chr09:9779432..9779456 (25 bp)
AGCTACTGCCTCATCAGTTCGGTAA
LOC_Os09g16000
OsAffx.17726.1.S1_at--735--3411Chr09:9779513..9779537 (25 bp)
CAGAATCGTTTGGTGGCCTCTCTAA
LOC_Os09g16000
OsAffx.17726.1.S1_at--429--4451Chr09:9779528..9779552 (25 bp)
GCCTCTCTAAGCTCTGTTCTTTAAG
LOC_Os09g16000
OsAffx.17726.1.S1_at--358--6731Chr09:9779564..9779588 (25 bp)
GTTCTAGCCTTCAACGATTGCCAGA
LOC_Os09g16000
OsAffx.17726.1.S1_at--927--8971Chr09:9779621..9779645 (25 bp)
TGAACATTTCACATGCTCACCTTGA
LOC_Os09g16000
OsAffx.17726.1.S1_at--317--10651Chr09:9779642..9779666 (25 bp)
TTGAGCTACCGGATTCACTGACCAA
LOC_Os09g16000
Target Sequence 
AAATGTGCTGCTTGCGAAGCCTTGAGTATTTGGATCTCTCAAAAACATGCATCGAAGTTCTGCCCTTGTTTGTTGGAGCT
TTTGATAAGCTGAAATACTTCAATCTACATGGATGTGGCAAACTCAAGAACTTGCCCCAAAACATTGGTGATCTCAAGAG
GCTAGAACACCTCAGCCTGTCATGCTGTCCTGAAATCCGTGAGTTACCTTCATCTATCTCCGGTCTTGATGAACTTAAGT
TGCTCAACCTATCAAGTTGCACCAAGCTTGAGCTACTGCCTCATCAGTTCGGTAACTTATCCTGTTTAGAGAGTCTTGAG
ATGGCAGGATGCTGTAGTCTTCAGAGATTACCAGAATCGTTTGGTGGCCTCTCTAAGCTCTGTTCTTTAAGCTTAGCAAG
TTGTTCTAGCCTTCAACGATTGCCAGATTATATTGGTGAGTTGTGTAGTTTAGAGTACTTGAACATTTCACATGCTCACC
TTGAGCTACCGGATTCACTGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis