Browse Element(s) Details


OsAffx.29866.1.S1_at

Description tigr:9637.m01335
TID=OsAffx.29866.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glucosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1603011/11Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15980Os.26963.1.A1_at11/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.11244.1.S1_at1/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.19810.4.S1_s_at1/119+9767948..9774758expressed protein
LOC_Os09g16000OsAffx.17726.1.S1_at11/119+9776526..9779697Leucine Rich Repeat family protein
LOC_Os09g16010OsAffx.6291.1.S1_at11/119+9780579..9782841BURP domain containing protein, expressed
LOC_Os09g16020NANA9+9784871..9785143hypothetical protein
LOC_Os09g16030OsAffx.29866.1.S1_at11/119+9789701..9791206Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os09g16040NANA9+9795728..9797952retrotransposon protein, putative, unclassified
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative
LOC_Os09g16060OsAffx.17728.1.S1_at11/119+9806843..9808072hypothetical protein
LOC_Os09g16070OsAffx.17729.1.S1_at11/119+9809123..9809491expressed protein
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29866.1.S1_at--177--7851Chr09:9790256..9790280 (25 bp)
GGTACTGTACATTGCGCTCGGGACT
LOC_Os09g16030
OsAffx.29866.1.S1_at--846--8111Chr09:9790236..9790260 (25 bp)
GGACTCTAGCGGTGATCCCAGAAGT
LOC_Os09g16030
OsAffx.29866.1.S1_at--894--6011Chr09:9790183..9790207 (25 bp)
GAGAGGGCCGAGGTTGACTTCATAT
LOC_Os09g16030
OsAffx.29866.1.S1_at--364--5691Chr09:9790168..9790192 (25 bp)
GACTTCATATGGGTCGTAAGCCCTA
LOC_Os09g16030
OsAffx.29866.1.S1_at--645--6871Chr09:9790153..9790177 (25 bp)
GTAAGCCCTAAAGACATCGACCTCG
LOC_Os09g16030
OsAffx.29866.1.S1_at--775--7671Chr09:9790077..9790101 (25 bp)
GGGTTGATCAATCCCAAATTTTGCA
LOC_Os09g16030
OsAffx.29866.1.S1_at--1132--6111Chr09:9790046..9790070 (25 bp)
GAGTGTGCGAGGTTTCCTCAGTCAC
LOC_Os09g16030
OsAffx.29866.1.S1_at--64--6131Chr09:9789998..9790022 (25 bp)
GAGTGTCACGGCTGGTGTGCCACTA
LOC_Os09g16030
OsAffx.29866.1.S1_at--37--7471Chr09:9789984..9790008 (25 bp)
GTGTGCCACTAGCAGTTTGGCCAAT
LOC_Os09g16030
OsAffx.29866.1.S1_at--93--10771Chr09:9789954..9789978 (25 bp)
TTGACCAACCGCTCAATGCGAGATT
LOC_Os09g16030
OsAffx.29866.1.S1_at--565--7151Chr09:9789882..9789906 (25 bp)
GTCTCAGGCGAGGTTTGGTTACACA
LOC_Os09g16030
Target Sequence 
GGTACTGTACATTGCGCTCGGGACTCTAGCGGTGATCCCAGAAGTACAGCTCAAGGAAGTCGCCAAAGGGTTGGAGAGGG
CCGAGGTTGACTTCATATGGGTCGTAAGCCCTAAAGACATCGACCTCGGCCCAGGGTTCGAAGAACGCGTCAAGGGAAAG
GGGATAGTGGTAAGGGATTGGGTTGATCAATCCCAAATTTTGCAACACAAGAGTGTGCGAGGTTTCCTCAGTCACTGCGG
GTGGAACTCTGTGCTTGAGAGTGTCACGGCTGGTGTGCCACTAGCAGTTTGGCCAATGAATTTTGACCAACCGCTCAATG
CGAGATTCTTAATTGATGATATGAAGATAGCGGTTATGGTTTGGACGAGCAATAGTCTCAGGCGAGGTTTGGTTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis