Browse Element(s) Details


OsAffx.6291.1.S1_at

Description tigr:9637.m01333
TID=OsAffx.6291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BURP domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1601011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15970OsAffx.22240.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.10020.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15970OsAffx.8338.1.S1_x_at1/119+9759791..9760995hypothetical protein
LOC_Os09g15980Os.26963.1.A1_at11/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.11244.1.S1_at1/119+9767948..9774758expressed protein
LOC_Os09g15980OsAffx.19810.4.S1_s_at1/119+9767948..9774758expressed protein
LOC_Os09g16000OsAffx.17726.1.S1_at11/119+9776526..9779697Leucine Rich Repeat family protein
LOC_Os09g16010OsAffx.6291.1.S1_at11/119+9780579..9782841BURP domain containing protein, expressed
LOC_Os09g16020NANA9+9784871..9785143hypothetical protein
LOC_Os09g16030OsAffx.29866.1.S1_at11/119+9789701..9791206Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os09g16040NANA9+9795728..9797952retrotransposon protein, putative, unclassified
LOC_Os09g16050OsAffx.29867.1.S1_at11/119+9801156..9803312ankyrin repeat family protein, putative
LOC_Os09g16060OsAffx.17728.1.S1_at11/119+9806843..9808072hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6291.1.S1_at--270--5671Chr09:9782097..9782121 (25 bp)
GACATCGCCGCGAAGATCCCGTTCG
LOC_Os09g16010
OsAffx.6291.1.S1_at--461--4591Chr09:9782106..9782130 (25 bp)
GCGAAGATCCCGTTCGACGCGGCCG
LOC_Os09g16010
OsAffx.6291.1.S1_at--367--7751Chr09:9782393..9782417 (25 bp)
GGTGTCGTGCCACCAGAGCTTGTTC
LOC_Os09g16010
OsAffx.6291.1.S1_at--55--1791Chr09:9782451..9782475 (25 bp)
ACCGTCCGCGTGTACGAGGCCGACA
LOC_Os09g16010
OsAffx.6291.1.S1_at--245--8471Chr09:9782479..9782503 (25 bp)
TGGCCGTCGATTCCAACCAGAAGAT
LOC_Os09g16010
OsAffx.6291.1.S1_at--234--7551Chr09:9782514..9782538 (25 bp)
GTGGCCATCTGCCATCTCGACACGT
LOC_Os09g16010
OsAffx.6291.1.S1_at--845--9351Chr09:9782530..9782554 (25 bp)
TCGACACGTCCGATTGGAGCCCGAA
LOC_Os09g16010
OsAffx.6291.1.S1_at--260--31Chr09:9782542..9782566 (25 bp)
ATTGGAGCCCGAATCACGGAGCCTT
LOC_Os09g16010
OsAffx.6291.1.S1_at--932--2431Chr09:9782783..9782807 (25 bp)
AAAAGGTTGATCCTACCAAATTCAT
LOC_Os09g16010
OsAffx.6291.1.S1_at--926--6351Chr09:9782791..9782815 (25 bp)
GATCCTACCAAATTCATATGTTTCA
LOC_Os09g16010
OsAffx.6291.1.S1_at--803--3571Chr09:9782805..9782829 (25 bp)
CATATGTTTCATCATGCAAGATGGG
LOC_Os09g16010
Target Sequence 
GACATCGCCGCGAAGATCCCGTTCGACGCGGCCGCCGTGTCGGCGCTGTTCGGCGCGGCGCCGGGCACGGCGATGCGGCA
GGTGGTGTCGTCCACGGTGGCCGAGTGCGCGCGCCCGCCGAGCCGCGGCGAGACGAAGCGGTGCGCGACGTCGGCCGAGG
ACGTCGTCGACTTCGCCGTGGAGATGCTCGGCGACAACGTCGTGGCGCGCGCCACGGAGTCGACGGCGGGCGGCGGCGGT
GACGTCAGGCTGGGCAGGGTCGCCGGCGTCCCCGCCGGCGGGAACGTGACGCGGTCGGTGTCGTGCCACCAGAGCTTGTT
CCCGTACCTGGTGTACTACTGCCACTCGGTGCCGACCGTCCGCGTGTACGAGGCCGACATCCTGGCCGTCGATTCCAACC
AGAAGATCAACCATGGCGTGGCCATCTGCCATCTCGACACGTCCGATTGGAGCCCGAATCACGGAGCCTTCATCGCGCTT
GGTGGAAAACCCGGTGAGATGGAGGGAAAAAGGTTGATCCTACCAAATTCATATGTTTCATCATGCAAGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis