Browse Element(s) Details


OsAffx.22240.1.S1_x_at

Description gb:NM_187820.1
DB_XREF= gi:34902725
GEN=P0710F09.27
TID=OsAffx.22240.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromsoome 3, OSJNBa0077G22.24 (P0710F09.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g222493/11Peroxidase family protein, expressed
LOC_Os08g084003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g064703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g208302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g199301/11retrotransposon protein, putative, unclassified
LOC_Os03g341601/11hypothetical protein
LOC_Os07g248001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g268481/11hypothetical protein
LOC_Os04g110201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g146291/11
LOC_Os04g239901/11hypothetical protein
LOC_Os05g150301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g179301/11retrotransposon protein, putative, unclassified
LOC_Os01g244201/11expressed protein
LOC_Os04g084801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g285901/11retrotransposon protein, putative, unclassified
LOC_Os09g159701/11hypothetical protein
LOC_Os12g146001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22200Os.14491.2.S1_x_at4/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.47463.1.S1_x_at3/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22200Os.41934.1.A1_x_at2/111+12465562..12468020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g22209OsAffx.23333.1.S1_at11/111+12470043..12472887hypothetical protein
LOC_Os01g22209OsAffx.23333.2.S1_x_at10/111+12470043..12472887hypothetical protein
LOC_Os01g22220OsAffx.23332.2.A1_at11/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.25889.2.S1_at10/111+12474474..12477137hypothetical protein
LOC_Os01g22220OsAffx.1923.1.S1_at1/111+12474474..12477137hypothetical protein
LOC_Os01g22230Os.35123.1.S1_at11/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22230Os.1559.1.S1_x_at2/111+12482404..12486690Peroxidase family protein, expressed
LOC_Os01g22249Os.17722.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.51434.1.S1_at11/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.38751.1.A1_at4/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_x_at3/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.22240.1.S1_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.1559.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.9790.1.S1_x_at2/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.1197.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249Os.49802.1.S2_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22249OsAffx.916.1.S1_x_at1/111+12492092..12501719Peroxidase family protein, expressed
LOC_Os01g22270Os.46012.2.S1_x_at8/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.27088.1.A1_x_at5/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22270Os.46012.3.S1_x_at4/111+12503513..12509276retrotransposon protein, putative, unclassified
LOC_Os01g22280NANA1+12511354..12513402retrotransposon protein, putative, unclassified
LOC_Os01g22289NANA1+12516600..12516863hypothetical protein
LOC_Os01g22300NANA1+12519025..12520374retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22309NANA1+12523828..12524091hypothetical protein
LOC_Os01g22320Os.45902.1.A1_x_at4/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22320Os.56372.1.S1_at1/111+12525855..12527244transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22240.1.S1_x_at--620--6151Chr07:12890967..12890991 (25 bp)
GAGGTCTCACGAGGCTAAGACTCTA
NONE
OsAffx.22240.1.S1_x_at--616--9511Chr07:12890963..12890987 (25 bp)
TCTCACGAGGCTAAGACTCTACCGG
NONE
OsAffx.22240.1.S1_x_at--1154--5851Chr07:12890957..12890981 (25 bp)
GAGGCTAAGACTCTACCGGCGACGA
NONE
OsAffx.22240.1.S1_x_at--1058--8291Chr07:12890955..12890979 (25 bp)
GGCTAAGACTCTACCGGCGACGAGA
NONE
OsAffx.22240.1.S1_x_at--108--4075Chr12:10152639..10152829 (25 bp)
CGATGGCGAAGGAAAGTTAAGGCTC
NONE
OsAffx.22240.1.S1_x_at--834--52583Chr12:4277191..4277215 (25 bp)
GAATCGAACTCGAATCCACGGATTT
NONE
OsAffx.22240.1.S1_x_at--584--43542Chr12:10152864..10152888 (25 bp)
CCACGGATTTCCAAAGCGATTTAGA
NONE
OsAffx.22240.1.S1_x_at--214--29151Chr12:23192407..23192431 (25 bp)
AAGGTAGAGGAGATCTCGGGAAACA
NONE
OsAffx.22240.1.S1_x_at--335--60537Chr12:23192418..23192442 (25 bp)
GATCTCGGGAAACATTTCCCCTCAA
NONE
OsAffx.22240.1.S1_x_at--979--94126Chr12:23192422..23192446 (25 bp)
TCGGGAAACATTTCCCCTCAATTGA
NONE
OsAffx.22240.1.S1_x_at--936--87969Chr12:8335703..8335727 (25 bp)
TGATTTCACCGGAGAAGGAAAGGCG
LOC_Os12g14600
Target Sequence 
GAGGTCTCACGAGGCTAAGACTCTACCGGCGACGAGAGACGAAGGCGAGGGTGGCGACGGGCAGCGGCGGGCTTGGGGAT
CCTTTTAAAGGGGTTGGAAGGCTGCGGCGAAGGCCCACGGCGACCGGCGATGGCGAAGGAAAGTTAAGGCTCGGAGGAAA
GAGACCGATCCGAATCGAACTCGAATCCACGGATTTCCAAAGCGATTTAGAGGATGATTCCAAAAGGGAAAAGGTAGAGG
AGATCTCGGGAAACATTTCCCCTCAATTGATTTCACCGGAGAAGGAAAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22240.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis