Browse Element(s) Details


Os.41934.1.A1_x_at

Description gb:NM_191603.1
DB_XREF= gi:34910289
GEN=P0013F10.3
TID=Os.41934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013F10.3 (P0013F10.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0013F10.3 (P0013F10.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0807010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g321002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g372402/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g222002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g297102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g151801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g145601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g033001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed
LOC_Os01g08050NANA1+3898186..3898638hypothetical protein
LOC_Os01g08060NANA1+3900292..3901712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.41934.1.A1_x_at10/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.14491.2.S1_x_at2/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41934.1.A1_x_at--340--10473Chr09:1590454..1590728 (25 bp)
TTACTCTTCGACCTGTCGGCCTACA
LOC_Os09g03300
Os.41934.1.A1_x_at--1037--9552Chr01:3903531..3903555 (25 bp)
TCTTCGACCTGTCGGCCTACACCGT
LOC_Os01g08070
Os.41934.1.A1_x_at--250--3815Chr12:22811697..22811830 (25 bp)
CTGTCGGCCTACACCGTCAACGTAT
LOC_Os12g37240
Os.41934.1.A1_x_at--599--8675Chr12:22811811..22811831 (21 bp)
TGTCGGCCTACACCGTCAACGTATA
LOC_Os12g37240
Os.41934.1.A1_x_at--1101--10271Chr01:3903605..3903713 (25 bp)
TTTCGAACTTATGGACAGGGCTTGG
LOC_Os01g08070
Os.41934.1.A1_x_at--498--10611Chr01:3903606..3903714 (25 bp)
TTCGAACTTATGGACAGGGCTTGGT
LOC_Os01g08070
Os.41934.1.A1_x_at--885--9331Chr01:3903607..3903715 (25 bp)
TCGAACTTATGGACAGGGCTTGGTA
LOC_Os01g08070
Os.41934.1.A1_x_at--249--4091Chr01:3903608..3903716 (25 bp)
CGAACTTATGGACAGGGCTTGGTAT
LOC_Os01g08070
Os.41934.1.A1_x_at--316--2531Chr01:3903610..3903718 (25 bp)
AACTTATGGACAGGGCTTGGTATCG
LOC_Os01g08070
Os.41934.1.A1_x_at--17--2051Chr01:3903611..3903719 (25 bp)
ACTTATGGACAGGGCTTGGTATCGG
LOC_Os01g08070
Os.41934.1.A1_x_at--325--10271NONE
TTTCCTTGCGGAAAGCAAAAGCAGG
NONE
Target Sequence 
TTACTCTTCGACCTGTCGGCCTACACCGTCAACGTATATGACTCAATGGATAAAAAAAGAGTCTACGTTTGACAAGGTTT
TCGAACTTATGGACAGGGCTTGGTATCGGTTCCGTCATTTGGTCCGCGGCAAATGGAGAGAAAGACTTAGGCGGAAGTTT
AAATTTCCTTGCGGAAAGCAAAAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41934.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis