Browse Element(s) Details


Os.53395.1.S1_at

Description gb:AK072421.1
DB_XREF= gi:32982444
TID=Os.53395.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086K01, full insert sequence.
FL= gb:AK072421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0802011/11Boron transporter-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed
LOC_Os01g08050NANA1+3898186..3898638hypothetical protein
LOC_Os01g08060NANA1+3900292..3901712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.41934.1.A1_x_at10/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.14491.2.S1_x_at2/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046713biological_processboron transport
GO:0005737cellular_componentcytoplasm
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0015380molecular_functionanion exchanger activity
GO:0046715molecular_functionboron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53395.1.S1_at--492--1671Chr01:3875582..3875606 (25 bp)
AGCCGTGACGATGCCGAGATATTAG
LOC_Os01g08020
Os.53395.1.S1_at--982--5571Chr01:3875189..3875525 (25 bp)
GAAAGGCACCCGCAGGCGCATACAA
LOC_Os01g08020
Os.53395.1.S1_at--734--2411Chr01:3875166..3875190 (25 bp)
AAAAGCCGTTCAGCCCAGGTGTGGA
LOC_Os01g08020
Os.53395.1.S1_at--1019--2131Chr01:3875138..3875162 (25 bp)
ACAGAAAACTGGTCCGAGTGCTAAA
LOC_Os01g08020
Os.53395.1.S1_at--264--2731Chr01:3875115..3875139 (25 bp)
AAGAATTTCGGCTTACTGTCGGATG
LOC_Os01g08020
Os.53395.1.S1_at--22--8291Chr01:3875079..3875103 (25 bp)
GGCATATATAGCACTTCCTCATACA
LOC_Os01g08020
Os.53395.1.S1_at--662--9591Chr01:3875061..3875085 (25 bp)
TCATACATTCCTACTTTCCTATACA
LOC_Os01g08020
Os.53395.1.S1_at--620--10291Chr01:3875047..3875071 (25 bp)
TTTCCTATACATCGCACTGTAGCAG
LOC_Os01g08020
Os.53395.1.S1_at--164--6411Chr01:3875020..3875044 (25 bp)
GATCGGCGGCCGTATGATATGATAT
LOC_Os01g08020
Os.53395.1.S1_at--505--7111Chr01:3874991..3875015 (25 bp)
GTCAGTTGTCACATTGTGCATGGAG
LOC_Os01g08020
Os.53395.1.S1_at--7--6551Chr01:3874950..3874974 (25 bp)
GATTTTACGATGTTCTCTAGCCTGT
LOC_Os01g08020
Target Sequence 
AGCCGTGACGATGCCGAGATATTAGATGAGCTGACAACTAACCGTGGAGAGCTAAAGCACAGAACTTTCAACCACCGTGA
AGAAAGGCACCCGCAGGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCGAGTGCTAAAGAA
TTTCGGCTTACTGTCGGATGGGTATACGATAGGCATATATAGCACTTCCTCATACATTCCTACTTTCCTATACATCGCAC
TGTAGCAGGAGATCGGCGGCCGTATGATATGATATGCTTGTCAGTTGTCACATTGTGCATGGAGTAAACAGAAGCAACTG
GATTTTACGATGTTCTCTAGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis