Browse Element(s) Details


OsAffx.31174.3.S1_x_at

Description tigr:9631.m00782
TID=OsAffx.31174.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0840011/11hypothetical protein
LOC_Os01g0799011/11expressed protein
LOC_Os04g5149011/11hypothetical protein
LOC_Os11g279905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31174.3.S1_x_at--1133--834Chr01:3866975..3866999 (25 bp)
ATGGCACAGCTAGCCTTGAACTTGT
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--470--5473Chr01:3867022..3867046 (25 bp)
GAACTTATTGGTAGGACTGCTGAAA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--359--6514Chr01:3867064..3867088 (25 bp)
GATATCAATCAAACACCTCCAGAAA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--863--2033Chr01:3867145..3867169 (25 bp)
ACTATCAACGCTGATGAACCTTCAT
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--672--5433Chr01:3867160..3867184 (25 bp)
GAACCTTCATTTGAGGTGCTGACAA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--995--933Chr01:3867202..3867226 (25 bp)
AGGCAACATTCCAGCCAAGGCTTTA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--588--8234Chr01:3867228..3867252 (25 bp)
GGCAACTAAGAATCTTCCCATCAGT
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--675--10654Chr01:3867242..3867266 (25 bp)
TTCCCATCAGTTCAAGTTCATCTCA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--1079--9873Chr01:3867272..3867296 (25 bp)
TACATAATTTACCTCCACTGGTGCC
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--462--4374Chr01:3867286..3867310 (25 bp)
CCACTGGTGCCTATACTATCCAAGA
LOC_Os01g07990
OsAffx.31174.3.S1_x_at--26--2733Chr01:3867872..3867896 (25 bp)
AAGCACTGACTATGGCTTCATTCAG
LOC_Os01g07990
Target Sequence 
ATGGCACAGCTAGCCTTGAACTTGTGCTATTTGAAAAGAAAGGTACAGAACTTATTGGTAGGACTGCTGAAACTATGAAA
AGGCAATATGATATCAATCAAACACCTCCAGAAATAAAAGCATGGATAGGACATAAATTCACATTCATAGTGAAGGTTTT
GCNGAACATAACTATCAACGCTGATGAACCTTCATTTGAGGTGCTGACAATTAAAGAAAGATTTGGAAGGCAACATTCCA
GCCAAGGCTTTAAGGCAACTAAGAATCTTCCCATCAGTTCAAGTTCATCTCAACAACTACATAATTTACCTCCACTGGTG
CCTATACTATCCAAGAAAATACAACATGAGATAGAACCACCCCAAGATATTCAAAGCATGGAAGTTGAACCATATAATTT
AGAAACAAGCACTTTGTCAGGAAAAAGAGCTTATGAAGATCCAAACAGTACAGATCAGGAAAATGATGAAGAAGAAAGCA
CTGACTATGGCTTCATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31174.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis