Browse Element(s) Details


Os.15574.1.S1_at

Description gb:AK070399.1
DB_XREF= gi:32980423
TID=Os.15574.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049M11, full insert sequence.
FL= gb:AK070399.1 gb:AK058391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0839011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15574.1.S1_at--644--10611Chr03:4270401..4270425 (25 bp)
TTCGGTTGTCGCAACTGAAGGAGAC
LOC_Os03g08390
Os.15574.1.S1_at--35--5991Chr03:4270421..4270445 (25 bp)
GAGACGAGTAACTGGCTCGACCAGT
LOC_Os03g08390
Os.15574.1.S1_at--114--4811Chr03:4270435..4270459 (25 bp)
GCTCGACCAGTTGCATAGTGAGGTT
LOC_Os03g08390
Os.15574.1.S1_at--634--451Chr03:4270465..4270489 (25 bp)
ATCTCAAGATGCTTTGGTTGAAACC
LOC_Os03g08390
Os.15574.1.S1_at--970--8571Chr03:4270479..4270503 (25 bp)
TGGTTGAAACCATTGAGCAGCTGAA
LOC_Os03g08390
Os.15574.1.S1_at--291--1771Chr03:4270517..4270541 (25 bp)
ACCTGCTTACTTGGGACTGTCGAGA
LOC_Os03g08390
Os.15574.1.S1_at--1023--1391Chr03:4270539..4270563 (25 bp)
AGACTGCGGCATCAGCACTTGAAGC
LOC_Os03g08390
Os.15574.1.S1_at--1038--5411Chr03:4270559..4270583 (25 bp)
GAAGCCAGGTAGATGCTGTCACAGG
LOC_Os03g08390
Os.15574.1.S1_at--263--4831Chr03:4270585..4270609 (25 bp)
GCTCAGGGCTGGTTGTGTTTATTTT
LOC_Os03g08390
Os.15574.1.S1_at--964--171Chr03:4270605..4270629 (25 bp)
ATTTTTTGGCTTGGAACCAGCTGAA
LOC_Os03g08390
Os.15574.1.S1_at--732--5451Chr03:4270650..4270674 (25 bp)
GAACTGCAACACACAATATGATCGA
LOC_Os03g08390
Target Sequence 
TTCGGTTGTCGCAACTGAAGGAGACGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTG
GTTGAAACCATTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGA
AGCCAGGTAGATGCTGTCACAGGNGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCT
GCTGTAACAGAACTGCAACACACAATATGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis