Browse Element(s) Details


Os.33256.1.S1_at

Description gb:AK101197.1
DB_XREF= gi:32986406
TID=Os.33256.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030K10, full insert sequence.
FL= gb:AK067807.1 gb:AK101197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0837011/11transposon protein, putative, unclassified, expressed
LOC_Os12g325801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33256.1.S1_at--661--2711Chr03:4254179..4254203 (25 bp)
AAGCATGCAGCTAAGCAACCCTTCT
LOC_Os03g08370
Os.33256.1.S1_at--188--10573Chr03:4254200..4254224 (25 bp)
TTCTTTCTTTTATGCTGTCCAGCTT
LOC_Os03g08370
Os.33256.1.S1_at--970--151Chr03:4254249..4254273 (25 bp)
ATTTTCTGGGCCGATTCCAAATCTA
LOC_Os03g08370
Os.33256.1.S1_at--445--5431Chr03:4254274..4254298 (25 bp)
GAACCGACTTCAGCTACTACAGTGA
LOC_Os03g08370
Os.33256.1.S1_at--1147--211Chr03:4254392..4254416 (25 bp)
ATTTGGTGCTGCCTTGCTTTATGAT
LOC_Os03g08370
Os.33256.1.S1_at--402--31Chr03:4254499..4254523 (25 bp)
ATTGGTCTATGGCAGCAACTACGGC
LOC_Os03g08370
Os.33256.1.S1_at--465--5151Chr03:4254513..4254537 (25 bp)
GCAACTACGGCTTCTGCGATAACAG
LOC_Os03g08370
Os.33256.1.S1_at--877--871Chr03:4254542..4254566 (25 bp)
ATGGCCTGGAACAGTTCATCGCCTT
LOC_Os03g08370
Os.33256.1.S1_at--973--531Chr03:4254559..4254583 (25 bp)
ATCGCCTTTGTCCATGGCAAGTGTA
LOC_Os03g08370
Os.33256.1.S1_at--477--6871Chr03:4254581..4254605 (25 bp)
GTACCAAAACTCTGTCAAGCACCTT
LOC_Os03g08370
Os.33256.1.S1_at--585--1351Chr03:4254677..4254701 (25 bp)
AGAGAACTTCTTGCTTGGATGGAAT
LOC_Os03g08370
Target Sequence 
AAGCATGCAGCTAAGCAACCCTTCTTTCTTTTATGCTGTCCAGCTTGATGAGGATGACAAACTGACAAACATTTTCTGGG
CCGATTCCAAATCTAGAACCGACTTCAGCTACTACAGTGACGTGGTTTGTTTGGACACAACCTACAAGATAAATGAACAT
AGCAGACCATTAACACTATTCCTTGGAGTGAACCACCACAAGCAAATCTCCATATTTGGTGCTGCCTTGCTTTATGATGA
ATCAGAAGAGTCTTTCAAGTGGCTATTTGATACATTCAAGATTGCTGCAAATGGAAAGCAACCAAAAACAATCTTGACAG
ATTGGTCTATGGCAGCAACTACGGCTTCTGCGATAACAGCAGCATGGCCTGGAACAGTTCATCGCCTTTGTCCATGGCAA
GTGTACCAAAACTCTGTCAAGCACCTTAATCACATCTTTNNAGGCTCCAAAACATTTGCAAAGGATTTCGGAAAATGCGT
TTATGACTACGATGATGAAGAGAACTTCTTGCTTGGATGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis