Browse Element(s) Details


OsAffx.25019.1.S1_at

Description tigr:9631.m00780
TID=OsAffx.25019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0838011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25019.1.S1_at--554--8531Chr03:4262972..4262996 (25 bp)
TGGACGCGCGGGAGCTTGACCTCAA
LOC_Os03g08380
OsAffx.25019.1.S1_at--388--4151Chr03:4262978..4263002 (25 bp)
CGCGGGAGCTTGACCTCAAGTGGCT
LOC_Os03g08380
OsAffx.25019.1.S1_at--165--951Chr03:4263029..4263053 (25 bp)
AGGAGCCGGCCCTCTTCAGCGGGTC
LOC_Os03g08380
OsAffx.25019.1.S1_at--229--9651Chr03:4263044..4263068 (25 bp)
TCAGCGGGTCCATCCGAGACAACAT
LOC_Os03g08380
OsAffx.25019.1.S1_at--716--1411Chr03:4263060..4263084 (25 bp)
AGACAACATCGGGTTCGGCAACCCA
LOC_Os03g08380
OsAffx.25019.1.S1_at--618--6711Chr03:4263072..4263096 (25 bp)
GTTCGGCAACCCAAAGGCCTCGTGG
LOC_Os03g08380
OsAffx.25019.1.S1_at--127--3691Chr03:4263082..4263106 (25 bp)
CCAAAGGCCTCGTGGGCCGAAATCG
LOC_Os03g08380
OsAffx.25019.1.S1_at--1142--971Chr03:4263119..4263143 (25 bp)
AGGAGGCCAACATCCACAAGTTCAT
LOC_Os03g08380
OsAffx.25019.1.S1_at--521--4051Chr03:4263716..4263740 (25 bp)
CGATCGTGAAGCAGGCGAGGATACT
LOC_Os03g08380
OsAffx.25019.1.S1_at--840--1751Chr03:4263770..4263794 (25 bp)
ACCTGGAGTCCGAGCGGCACGTGCA
LOC_Os03g08380
OsAffx.25019.1.S1_at--440--1951Chr03:4263947..4263971 (25 bp)
ACGGCCTCTACGCTGCCATGGTGAA
LOC_Os03g08380
Target Sequence 
TGGACGCGCGGGAGCTTGACCTCAAGTGGCTCCGCGGCGAGTGCGCCATGGTGGGCCAGGAGCCGGCCCTCTTCAGCGGG
TCCATCCGAGACAACATCGGGTTCGGCAACCCAAAGGCCTCGTGGGCCGAAATCGAGGAGGCCGCCAAGGAGGCCAACAT
CCACAAGTTCATCTCCGCCCTCCCCCAAGGCTACGAAACCCAGGTTGGGGAGAGTGGGGTGCAGTTGTCAGGTGGGCAGA
AGCAGAGGATCGCGATCGCGCGGGCGATCGTGAAGCAGGCGAGGATACTGCTGCTGGACGAGGCGAGCAGCGCGCTGGAC
CTGGAGTCCGAGCGGCACGTGCAGGAGGCCCTGAGGAGGGCCTCGCGGCGCGCCACGGCGATCACCGTGGCGCACCGCCT
CTCCACCGTGCGCGACGCCGACCGCATCGCCGTCGTCAGCGCCGGCAGGGTCGTCGAGTTCGGCGGCCATGACGCCCTCC
TCGCCGGCCACGGCGACGGCCTCTACGCTGCCATGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis