Browse Element(s) Details


OsAffx.12780.1.S1_at

Description tigr:9631.m00783
TID=OsAffx.12780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0841011/11dimethylaniline monooxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12780.1.S1_at--198--5711Chr03:4292745..4292769 (25 bp)
GACTACGCGAGCTGCCAGATGGCCA
LOC_Os03g08410
OsAffx.12780.1.S1_at--647--8451Chr03:4292794..4292818 (25 bp)
TGGCCGACCGCGACCTGATCCGTTT
LOC_Os03g08410
OsAffx.12780.1.S1_at--550--8611Chr03:4292838..4292862 (25 bp)
TGGTGCTTCTCCGAGAACGGCGTCG
LOC_Os03g08410
OsAffx.12780.1.S1_at--645--4351Chr03:4292908..4292932 (25 bp)
CCACCGGCTTCGAGGGCAAGGACAA
LOC_Os03g08410
OsAffx.12780.1.S1_at--71--1071Chr03:4292920..4292944 (25 bp)
AGGGCAAGGACAAGCTCCGCTCCGT
LOC_Os03g08410
OsAffx.12780.1.S1_at--1153--7191Chr03:4292970..4292994 (25 bp)
GTCGTCAACAAATCCTCCATGATGC
LOC_Os03g08410
OsAffx.12780.1.S1_at--518--7631Chr03:4293092..4293116 (25 bp)
GGGACGATACATCCGCTGATACCGA
LOC_Os03g08410
OsAffx.12780.1.S1_at--776--331Chr03:4293098..4293122 (25 bp)
ATACATCCGCTGATACCGAACATGG
LOC_Os03g08410
OsAffx.12780.1.S1_at--926--8831Chr03:4293108..4293132 (25 bp)
TGATACCGAACATGGCGTTCGTGGG
LOC_Os03g08410
OsAffx.12780.1.S1_at--1117--7511Chr03:4293137..4293161 (25 bp)
GTGGAGAGCGTGTCGAACCTGCACA
LOC_Os03g08410
OsAffx.12780.1.S1_at--500--2631Chr03:4293152..4293176 (25 bp)
AACCTGCACACGTCGGAGCTGAGGT
LOC_Os03g08410
Target Sequence 
GACTACGCGAGCTGCCAGATGGCCATCCTGCCGGACGGCTTCTTCGACATGGCCGACCGCGACCTGATCCGTTTCCGGCG
CTCCGCCGGCGGCTGGTGCTTCTCCGAGAACGGCGTCGTCCTCGACGACGGCACCCACGTCGACGCCGACCTCGTCTTCC
TCGCCACCGGCTTCGAGGGCAAGGACAAGCTCCGCTCCGTCCTCCCCGAGCCCTTCCGCGGCCTCGTCGTCAACAAATCC
TCCATGATGCCCCTCTACCGGGGGACGATACATCCGCTGATACCGAACATGGCGTTCGTGGGGTACGTGGAGAGCGTGTC
GAACCTGCACACGTCGGAGCTGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis