Browse Element(s) Details


Os.10138.2.S1_a_at

Description gb:AK061289.1
DB_XREF= gi:32971307
TID=Os.10138.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A03, full insert sequence.
FL= gb:AK061289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0844011/1140S ribosomal protein SA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08410OsAffx.12780.1.S1_at11/113+4290409..4293430dimethylaniline monooxygenase, putative, expressed
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0042256biological_processmature ribosome assembly
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10138.2.S1_a_at--1150--8311Chr03:4316877..4316901 (25 bp)
GGCTCTTGGCTAGGATGGTTCTGCA
LOC_Os03g08440
Os.10138.2.S1_a_at--79--9891Chr03:4316843..4316867 (25 bp)
TACTATCCTCCCTGGCCACAAGTGG
LOC_Os03g08440
Os.10138.2.S1_a_at--7--7531Chr03:4316586..4316610 (25 bp)
GTGGACCTCTGATGTGGCTGCTCCC
LOC_Os03g08440
Os.10138.2.S1_a_at--165--391Chr03:4316134..4316158 (25 bp)
ATCACTTTGAGATGTCTTCCGCAGC
LOC_Os03g08440
Os.10138.2.S1_a_at--443--6271Chr03:4316124..4316148 (25 bp)
GATGTCTTCCGCAGCTTAAGTTAAA
LOC_Os03g08440
Os.10138.2.S1_a_at--668--2811Chr03:4316107..4316131 (25 bp)
AAGTTAAATATTTCCCGAGGCATGA
LOC_Os03g08440
Os.10138.2.S1_a_at--579--10291Chr03:4316097..4316121 (25 bp)
TTTCCCGAGGCATGAATGAACACCC
LOC_Os03g08440
Os.10138.2.S1_a_at--60--8691Chr03:4316063..4316087 (25 bp)
TGTGATCATCTATAGCTACACCATG
LOC_Os03g08440
Os.10138.2.S1_a_at--1160--4831Chr03:4316049..4316073 (25 bp)
GCTACACCATGAACTCAACTGTTTT
LOC_Os03g08440
Os.10138.2.S1_a_at--807--10091Chr03:4316024..4316048 (25 bp)
TAGGAATTTCTAGCTGAACCTGTGT
LOC_Os03g08440
Os.10138.2.S1_a_at--192--8991Chr03:4316010..4316034 (25 bp)
TGAACCTGTGTTGTTTGTCCGTCCC
LOC_Os03g08440
Target Sequence 
GGCTCTTGGCTAGGATGGTTCTGCAGATGAGGGGTACTATCCTCCCTGGCCACAAGTGGGATGTTATGGTTGATCTGTTT
TTCTACAGAGACCCTGAGGAGGCCAAGGAGCAGGAGGAGGAAGCTCCAGCACAAGACTTTGCTGCCATCACTGATTACAC
CGCACCTGAACAATGGTCTGCTGACCAGTGGACCTCTGATGTGGCTGCTCCCCCAGCTGCTACTGTTGGTGATTGGGGCG
CAGCTCCAGCTCCAGTTGCTGCTGCCGAANGATGGGATCAAGCAGGAGCACCCGTAGCCACTGAAGCCGCCGTCGTTCCA
CCGGTTGCGCCTACTGGATGGGACCCGGCAGCTCAACCAGCTGCTCAAGGCTGGGATTAGGCTAGGCAATCACTTTGAGA
TGTCTTCCGCAGCTTAAGTTAAATATTTCCCGAGGCATGAATGAACACCCAAAATCCAATGTGATCATCTATAGCTACAC
CATGAACTCAACTGTTTTTAGGAATTTCTAGCTGAACCTGTGTTGTTTGTCCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10138.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis