Browse Element(s) Details


Os.10398.1.S1_at

Description gb:AK065516.1
DB_XREF= gi:32975534
TID=Os.10398.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10398 (NCBI UniGene Cluster)
UG_TITLE=Riaa1 (riaa1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026O15, full insert sequence.
FL= gb:AK067631.1 gb:AK065516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0848011/11SAP-like protein BP-73, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0007035biological_processvacuolar acidification
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10398.1.S1_at--845--6471Chr03:4338770..4338794 (25 bp)
GATACGACTCTGAAATCTTCCTTAG
LOC_Os03g08480
Os.10398.1.S1_at--169--8031Chr03:4338746..4338770 (25 bp)
GGAGGTCCTGATTTAAGCACTTTGA
LOC_Os03g08480
Os.10398.1.S1_at--558--691Chr03:4338655..4338679 (25 bp)
ATGACCTGGTTGAACTGCTGAGCAA
LOC_Os03g08480
Os.10398.1.S1_at--930--6791Chr03:4338591..4338615 (25 bp)
GTTTTGTCCCTTGTTAGTCACATTG
LOC_Os03g08480
Os.10398.1.S1_at--331--10171Chr03:4338550..4338574 (25 bp)
TATCTTGCCATTCCTATCTTATCTA
LOC_Os03g08480
Os.10398.1.S1_at--754--2231Chr03:4338482..4338506 (25 bp)
ACAATGTTCTGTTCTGGTTTTATCG
LOC_Os03g08480
Os.10398.1.S1_at--240--1751Chr03:4338443..4338467 (25 bp)
ACCTAGCCTCTAGTTACCATTGTTT
LOC_Os03g08480
Os.10398.1.S1_at--970--6811Chr03:4338422..4338446 (25 bp)
GTTTTTGCGTAAATCCTTCATCAGA
LOC_Os03g08480
Os.10398.1.S1_at--664--3411Chr03:4338401..4338425 (25 bp)
CAGAATTGAACCCTGGATTGGCCAT
LOC_Os03g08480
Os.10398.1.S1_at--728--8231Chr03:4338370..4338394 (25 bp)
GGCAACGATTCGACGTCATGCTGAT
LOC_Os03g08480
Os.10398.1.S1_at--1014--6831Chr03:4338266..4338290 (25 bp)
GTTTCTCTCGTTTACATCCATGGTT
LOC_Os03g08480
Target Sequence 
GATACGACTCTGAAATCTTCCTTAGGAGGTCCTGATTTAAGCACTTTGAAGGTCACAGAACTAAGAGAACTTGCGAAATC
TCGAGGAATCAAAGGATATTCCAAGATGAAGAAGAATGACCTGGTTGAACTGCTGAGCAACATGGCTTGATCCATCAGCA
GCCCTGTCAACTTGGCTCTGTTTTGTCCCTTGTTAGTCACATTGTCTTGGGCATATGCACTATCTTGCCATTCCTATCTT
ATCTAGATGAAGTTCTTTTAGGTAGAAAACTGTAAATGAGCAAGGTAAACAATGTTCTGTTCTGGTTTTATCGNTGCCCT
TTCTGTTACCTAGCCTCTAGTTACCATTGTTTTTGCGTAAATCCTTCATCAGAATTGAACCCTGGATTGGCCATAAGACT
GGCAACGATTCGACGTCATGCTGATNANNNNNNNANNNNNANTGTTCTATTCTTATCTCTGTTGTTTCTCCTTTCTCATG
GCAGCTCTTGTCTGCTGTTGCATGGTTTCTCTCGTTTACATCCATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis