Browse Element(s) Details


Os.51546.1.S1_at

Description gb:AK063042.1
DB_XREF= gi:32973060
TID=Os.51546.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D07, full insert sequence.
FL= gb:AK063042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0852011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51546.1.S1_at--1121--7671Chr03:4359456..4359480 (25 bp)
GGGTTCTTGAACTGCTGCTACTGCT
LOC_Os03g08520
Os.51546.1.S1_at--750--9951Chr03:4359417..4359441 (25 bp)
TACGCCGACATGGATGTGTTCGTCT
LOC_Os03g08520
Os.51546.1.S1_at--162--5951Chr03:4359219..4359243 (25 bp)
GAGCACGCGTTCTGCAGCGCGGAAT
LOC_Os03g08520
Os.51546.1.S1_at--171--4391Chr03:4359095..4359119 (25 bp)
CCAAGATCGGTGGACACGCGAGGCT
LOC_Os03g08520
Os.51546.1.S1_at--63--531Chr03:4359027..4359051 (25 bp)
ATCGAGATCGAGGTTCATCTCCGCT
LOC_Os03g08520
Os.51546.1.S1_at--1113--9591Chr03:4359013..4359037 (25 bp)
TCATCTCCGCTAGTTTCTGAACAAT
LOC_Os03g08520
Os.51546.1.S1_at--1004--8051Chr03:4358956..4358980 (25 bp)
GGAGACGTACGGCTACTCATTCTGT
LOC_Os03g08520
Os.51546.1.S1_at--435--7091Chr03:4358933..4358957 (25 bp)
GTCACAGATTTTGTTGTCCTCGTCT
LOC_Os03g08520
Os.51546.1.S1_at--39--7271Chr03:4358918..4358942 (25 bp)
GTCCTCGTCTACTTCACATGTATAA
LOC_Os03g08520
Os.51546.1.S1_at--12--8751Chr03:4358891..4358915 (25 bp)
TGTAATTGTATTTTTCGATCTCTTC
LOC_Os03g08520
Os.51546.1.S1_at--67--6371Chr03:4358875..4358899 (25 bp)
GATCTCTTCTTTTCGTCTATAACCA
LOC_Os03g08520
Target Sequence 
GGGTTCTTGAACTGCTGCTACTGCTGCCACAAGAAGCTCTACGCCGACATGGATGTGTTCGTCTACAAAGGGGAGCACGC
GTTCTGCAGCGCGGAATGCCGGAGCCAGCAGATGGCGAGGGAGGAGAGGCGAGAGATCGAGATGCTGGTGAGGCGGCGCC
GCGACGCGTTCCACCGCCGGCGAGCTTCGCCGCCGGCCAAGATCGGTGGACACGCGAGGCTGCAGATCGCTGCTTCATGA
TTTATATATACATATGACAGACTTATCGAGATCGAGGTTCATCTCCGCTAGTTTCTGAACAATTTTTCAGGAGAAATTAG
GGAGGACAATACAACGGAGACGTACGGCTACTCATTCTGTCACAGATTTTGTTGTCCTCGTCTACTTCACATGTATAAAT
TGTAATTGTATTTTTCGATCTCTTCTTTTCGTCTATAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51546.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis