Browse Element(s) Details


OsAffx.12784.1.S1_at

Description tigr:9631.m00801
TID=OsAffx.12784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plasma-membrane proton-efflux P-type ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0856011/11ATPase 10, plasma membrane-type, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0007035biological_processvacuolar acidification
GO:0009935biological_processnutrient import
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
GO:0019829molecular_functioncation-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12784.1.S1_at--769--1871Chr03:4383386..4383410 (25 bp)
ACGAGATCTCGTCAGCGATGTACCT
LOC_Os03g08560
OsAffx.12784.1.S1_at--506--751Chr03:4383369..4383393 (25 bp)
ATGTACCTGCAAGTCAGCATCATCA
LOC_Os03g08560
OsAffx.12784.1.S1_at--468--231Chr03:4383333..4383357 (25 bp)
ATATTCGTCACACGCAGTCAGGGCT
LOC_Os03g08560
OsAffx.12784.1.S1_at--30--9651Chr03:4383316..4383340 (25 bp)
TCAGGGCTTGTCCTTCCTCGAGAGA
LOC_Os03g08560
OsAffx.12784.1.S1_at--1008--5871Chr03:4383287..4383311 (25 bp)
GAGCCCTGCTGATTTGTGCTTTCAT
LOC_Os03g08560
OsAffx.12784.1.S1_at--386--4891Chr03:4383272..4383294 (23 bp)
GCTTTCATCCTAGCACAATTGGTGG
LOC_Os03g08560
OsAffx.12784.1.S1_at--876--2171Chr03:4383129..4383153 (25 bp)
ACACTGATCGCCGTGTACGCAACGA
LOC_Os03g08560
OsAffx.12784.1.S1_at--40--8491Chr03:4383054..4383078 (25 bp)
TGGCTGTACAGCCTGGTGTTCTACG
LOC_Os03g08560
OsAffx.12784.1.S1_at--33--5431Chr03:4382982..4383006 (25 bp)
GAAGCCTGGAACCTGCTGTTCGACA
LOC_Os03g08560
OsAffx.12784.1.S1_at--1053--2571Chr03:4382738..4382762 (25 bp)
AACGGAGGGCGCTTTCCGATCATCT
LOC_Os03g08560
OsAffx.12784.1.S1_at--160--9331Chr03:4382407..4382427 (21 bp)
TCGCCAGATTGGGAGATGCACATAT
LOC_Os03g08560
Target Sequence 
ACGAGATCTCGTCAGCGATGTACCTGCAAGTCAGCATCATCAGCCAGGCCCTGATATTCGTCACACGCAGTCAGGGCTTG
TCCTTCCTCGAGAGACCTGGAGCCCTGCTGATTTGTGCTTTCATCCTAGCACAATTGGTGGCTACACTGATCGCCGTGTA
CGCAACGATCAGCTTCGCGTCGATCAGCGCGATCGGGTGGGGATGGGCGGGCGTGATATGGCTGTACAGCCTGGTGTTCT
ACGCCCCCCTCGATCTGATCAAGATCGCCGTCCGCTACACGCTCAGCGGCGAAGCCTGGAACCTGCTGTTCGACAGGAAG
GAGAGACTACGGCGGCAACGAGCGGCGGCCGGAGACCAGGTGGCCGCGCTCCCATCATCATCATCATCAACAACGGAGGG
CGCTTTCCGATCATCTCCTCAGCAGCGGATGGCGGCCTACGCGGATCGCGGAGCGAGCCAAGCGACGGGCAGAAATCGCC
AGATTGGGAGATGCACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis