Browse Element(s) Details


Os.50009.1.S1_at

Description gb:AK120569.1
DB_XREF= gi:37990192
TID=Os.50009.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134B09, full insert sequence.
FL= gb:AK119613.1 gb:AK120569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0860011/11glycogenin glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed
LOC_Os03g08610Os.9148.1.S1_at11/113+4413677..4417010leucine-rich repeat family protein, putative, expressed
LOC_Os03g08620Os.9079.1.S1_at1/113+4416899..4418991B3 DNA binding domain containing protein, expressed
LOC_Os03g08630Os.52148.1.S1_at11/113+4423132..4425588dihydrokaempferol 4-reductase, putative, expressed
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50009.1.S1_at--155--6391Chr03:4412789..4412813 (25 bp)
GATCGAGATCGCCTGGGACCGACAC
LOC_Os03g08600
Os.50009.1.S1_at--584--3171Chr03:4412873..4412897 (25 bp)
CAAGTGGGAGTAGATTGCCTCGCCG
LOC_Os03g08600
Os.50009.1.S1_at--444--6991Chr03:4412921..4412945 (25 bp)
GTACGACGTGGCAGCTTGCTAGCTT
LOC_Os03g08600
Os.50009.1.S1_at--223--4711Chr03:4412967..4412991 (25 bp)
GCTGGCTGGCCGCATTTAGAATTTT
LOC_Os03g08600
Os.50009.1.S1_at--966--4911Chr03:4412978..4413002 (25 bp)
GCATTTAGAATTTTGGGCCTCCGTT
LOC_Os03g08600
Os.50009.1.S1_at--767--6731Chr03:4413025..4413049 (25 bp)
GTTCATATATACACGCACAGGGACT
LOC_Os03g08600
Os.50009.1.S1_at--936--10031Chr03:4413051..4413075 (25 bp)
TAGATTTACTAAGCCCTCGGTGAAT
LOC_Os03g08600
Os.50009.1.S1_at--271--3192Chr03:4413156..4413180 (25 bp)
CAATCTTTTCATTTTAGACCGGATA
LOC_Os03g08600
Os.50009.1.S1_at--400--5831Chr03:4413172..4413196 (25 bp)
GACCGGATAACTTTGCCTATAGTAT
LOC_Os03g08600
Os.50009.1.S1_at--926--10051Chr03:4413191..4413215 (25 bp)
TAGTATTTGGCTTGGATCACCCCAC
LOC_Os03g08600
Os.50009.1.S1_at--1113--1794Chr08:4040604..4040623 (20 bp)
ACCCCACTCTCTTTACTATTCATGT
NONE
Target Sequence 
GATCGAGATCGCCTGGGACCGACACCTCGCCGAGGAGGCCGGCTTCTCCGACCACCACTGGAAGATCAACATCACCGACC
CCCGCAAGTGGGAGTAGATTGCCTCGCCGGCGATCGCCGCCGTCCCGTCCCCGTACGACGTGGCAGCTTGCTAGCTTAGC
TGGGCTGGGCTGGGATGGGCTGGCTGGCCGCATTTAGAATTTTGGGCCTCCGTTAATTCTNTCTTCTTTAACCTCTGTTC
ATATATACACGCACAGGGACTATAGATTTACTAAGCCCTCGGTGAATAATTCAATCACAAGTAAATAATTGAGTAAAATG
AAGTCACCTTTTTATTGTCAAAGTTTTACTTTGGATCACACTTAAACCAATCTTTTCATTTTAGACCGGATAACTTTGCC
TATAGTATTTGGCTTGGATCACCCCACTCTCTTTACTATTCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis