Browse Element(s) Details


Os.52148.1.S1_at

Description gb:AK065264.1
DB_XREF= gi:32975282
TID=Os.52148.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002K08, full insert sequence.
FL= gb:AK065264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0863011/11dihydrokaempferol 4-reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein
LOC_Os03g08590OsAffx.12785.1.S1_at11/113+4398190..4398499hypothetical protein
LOC_Os03g08600Os.50009.1.S1_at11/113+4407955..4413278glycogenin glucosyltransferase, putative, expressed
LOC_Os03g08610Os.9148.1.S1_at11/113+4413677..4417010leucine-rich repeat family protein, putative, expressed
LOC_Os03g08620Os.9079.1.S1_at1/113+4416899..4418991B3 DNA binding domain containing protein, expressed
LOC_Os03g08630Os.52148.1.S1_at11/113+4423132..4425588dihydrokaempferol 4-reductase, putative, expressed
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006721biological_processterpenoid metabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52148.1.S1_at--376--6491Chr03:4424915..4424939 (25 bp)
GATAGGGAATCGTTTTGCCATGTTG
LOC_Os03g08630
Os.52148.1.S1_at--710--6791Chr03:4424926..4424950 (25 bp)
GTTTTGCCATGTTGACGACGTTGTT
LOC_Os03g08630
Os.52148.1.S1_at--889--8931Chr03:4424938..4424962 (25 bp)
TGACGACGTTGTTAATGGGCACATA
LOC_Os03g08630
Os.52148.1.S1_at--766--131Chr03:4425053..4425077 (25 bp)
ATTACAAATACGAAGGCACCCCTAT
LOC_Os03g08630
Os.52148.1.S1_at--147--10231Chr03:4425075..4425099 (25 bp)
TATTCCATGTACCTCTCTGGTTGAT
LOC_Os03g08630
Os.52148.1.S1_at--913--6811Chr03:4425122..4425146 (25 bp)
GTTTTTATTTCTCACATCACTGGAA
LOC_Os03g08630
Os.52148.1.S1_at--1110--6771Chr03:4425162..4425274 (25 bp)
GTTACCCTACAGTACGTGTTCTTAG
LOC_Os03g08630
Os.52148.1.S1_at--644--1071Chr03:4425309..4425333 (25 bp)
AGGGAGCTGGGCTACAGTCCAAGAA
LOC_Os03g08630
Os.52148.1.S1_at--360--6811Chr03:4425392..4425416 (25 bp)
GTTTTAGCACTCACCCCTTGTGCTA
LOC_Os03g08630
Os.52148.1.S1_at--98--4951Chr03:4425426..4425450 (25 bp)
GCATTCCACACCATGTAAACTGAGA
LOC_Os03g08630
Os.52148.1.S1_at--203--811Chr03:4425537..4425561 (25 bp)
ATGGTAGTACTGGTTCCATGGAAGA
LOC_Os03g08630
Target Sequence 
GATAGGGAATCGTTTTGCCATGTTGACGACGTTGTTAATGGGCACATAGCAGCAATGGAGAAGGGCAGACCGGGGGAAAG
ATATCTCCTTACTGGAGAAAACTTATCATTCAAACAGATTTTCGATATGNCTGCTAACATTACAAATACGAAGGCACCCC
TATTCCATGTACCTCTCTGGTTGATTGAAATATNNGGGTGGATTTCAGTTTTTATTTCTCACATCACTGGAAATCTCNCA
CTTATCAGTTACCCTACAGTACGTGTTCTTAGACATCAATGGGCATATTCATGTGATAAAGCCAAGAGGGAGCTGGGCTA
CAGTCCAAGAAACTTAACTGAAGGTCTATCAGAGATGCTCTTATGGCTCAAGGATGAAAAATTGATCANGTTTTAGCACT
CACCCCTTGTGCTAACTTGTNCTGCATTCCACACCATGTAAACTGAGATCTGATTTAAACCTATTAACTGTAAGATGTAC
ANGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAATAACTTGAGATNTAACATGGTAGTACTGGTTCCATGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis