Browse Element(s) Details


OsAffx.3175.1.S1_at

Description tigr:9631.m00814
TID=OsAffx.3175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0867011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08630Os.52148.1.S1_at11/113+4423132..4425588dihydrokaempferol 4-reductase, putative, expressed
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08690Os.50581.1.S1_at11/113+4458791..4460364expressed protein
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3175.1.S1_at--234--1471Chr03:4446840..4446864 (25 bp)
AGAAGGACACCTCCTGCATGACGAC
LOC_Os03g08670
OsAffx.3175.1.S1_at--70--9271Chr03:4446851..4446875 (25 bp)
TCCTGCATGACGACCGGCGATGGAG
LOC_Os03g08670
OsAffx.3175.1.S1_at--573--931Chr03:4446909..4446933 (25 bp)
AGGCAGAGCGTGTCATTTGCGCCAA
LOC_Os03g08670
OsAffx.3175.1.S1_at--402--1371Chr03:4446913..4446937 (25 bp)
AGAGCGTGTCATTTGCGCCAACTGC
LOC_Os03g08670
OsAffx.3175.1.S1_at--381--8731Chr03:4446919..4446943 (25 bp)
TGTCATTTGCGCCAACTGCCCGCAT
LOC_Os03g08670
OsAffx.3175.1.S1_at--186--6151Chr03:4447011..4447035 (25 bp)
GAGGTGGCGCCATCGTGAGATACAA
LOC_Os03g08670
OsAffx.3175.1.S1_at--81--511Chr03:4447022..4447046 (25 bp)
ATCGTGAGATACAACCACGGAGGAG
LOC_Os03g08670
OsAffx.3175.1.S1_at--329--1531Chr03:4447079..4447486 (25 bp)
AGCAGTGCCGCGATGAAGAACGACA
LOC_Os03g08670
OsAffx.3175.1.S1_at--49--6311Chr03:4447090..4447497 (25 bp)
GATGAAGAACGACAACCTCGCTAAG
LOC_Os03g08670
OsAffx.3175.1.S1_at--564--4631Chr03:4447545..4447569 (25 bp)
GCGATATGCCGATACGTTGTCTCCT
LOC_Os03g08670
OsAffx.3175.1.S1_at--718--311Chr03:4447556..4447580 (25 bp)
ATACGTTGTCTCCTGTCTACAGTCT
LOC_Os03g08670
Target Sequence 
AGAAGGACACCTCCTGCATGACGACCGGCGATGGAGGCGGTGAGTTCGGGCGGTCGGTGGTGGAGGCGGAGGCAGAGCGT
GTCATTTGCGCCAACTGCCCGCATCGTCCTTCCAGATCCGCGCGGCCTCCGCCCCCGTCCGCTAATGTCCGGTCTCGGGG
AGGATGGAAGGGAGGTGGCGCCATCGTGAGATACAACCACGGAGGAGGCGGGGACGACGTCAACGTGAGAGGCGGAGACA
GCAGTGCCGCGATGAAGAACGACAACCTCGCTAAGCCAAACTGCCGGTTCCCTCCGAATCAAGTGCTAGCAGGCCAGTTC
AAGCGATATGCCGATACGTTGTCTCCTGTCTACAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis