Browse Element(s) Details


OsAffx.25032.1.S1_s_at

Description tigr:9631.m00907
TID=OsAffx.25032.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine O-acetyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1005011/11satase isoform II, putative, expressed
LOC_Os03g086602/11satase isoform II, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10030OsAffx.12803.1.S1_at9/113+5013431..5019120plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os03g10040NANA3+5028371..5028907F-box domain containing protein
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0009970biological_processcellular response to sulfate starvation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0009001molecular_functionserine O-acetyltransferase activity
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25032.1.S1_s_at--443--5892Chr03:4444044..4444068 (25 bp)
GAGCGTGCTCGGCAATGTGCACATT
LOC_Os03g08660
OsAffx.25032.1.S1_s_at--1005--3192Chr03:4444056..4444080 (25 bp)
CAATGTGCACATTGGCGACGGAGCG
LOC_Os03g08660
OsAffx.25032.1.S1_s_at--665--1311Chr03:5043276..5043300 (25 bp)
AGATGGTCGGATTGAATGGCTTGCA
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--1111--851Chr03:5043261..5043285 (25 bp)
ATGGCTTGCATAGCGTGCAGTGTGA
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--407--172Chr03:4444279..4444303 (25 bp)
ATTTTCTGGTGATGACTACTCTTGT
NONE
OsAffx.25032.1.S1_s_at--439--5712Chr03:4444292..4444312 (21 bp)
GACTACTCTTGTAAACCTATACTAC
NONE
OsAffx.25032.1.S1_s_at--565--1191Chr03:5043130..5043154 (25 bp)
AGTATTTGGCCTGGGAATGAGCTCA
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--16--8431Chr03:5043123..5043147 (25 bp)
GGCCTGGGAATGAGCTCAATTAGCA
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--775--3131Chr03:5043106..5043130 (25 bp)
AATTAGCATTGAGCCCTTTCAAGTC
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--992--8911Chr03:5043097..5043121 (25 bp)
TGAGCCCTTTCAAGTCAAAACTTTT
LOC_Os03g10050
OsAffx.25032.1.S1_s_at--1053--5511Chr03:5043037..5043061 (25 bp)
GAAAAACGTCTCTGATCATCTATTG
LOC_Os03g10050
Target Sequence 
GAGCGTGCTCGGCAATGTGCACATTGGCGACGGAGCGNAGATCGGAGCCGGNGCANTCGTGCTACGGGACGTGGCGGACG
GAACCACGGCCNNNNNNNNNNNNNNNAAGCCGATCATCGGCAAGAAGGCGGNGCCGCAACGNNNNNNNNNAGAGCTTCCC
GGGGTAACCATGGAGCAGAGATGGTCGGATTGAATGGCTTGCATAGCGTGCAGTGTGAACGCAAAATGGTTAGTAACTTT
TAGTACAAGAGAGTTTCCCACCAAAAGTTATTTTCTGGTGATGACTACTCTTGTAAACCTATACTACTCTATAGAGATTA
GACAAGTATTTGGCCTGGGAATGAGCTCAATTAGCATTGAGCCCTTTCAAGTCAAAACTTTTTTTTTCATTTTTTTTTAC
TTTTCCTAAGGAATAACGAAAAACGTCTCTGATCATCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25032.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis