Browse Element(s) Details


Os.28094.1.S1_s_at

Description gb:AK058535.1
DB_XREF= gi:32968553
TID=Os.28094.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A12, full insert sequence.
FL= gb:AK104108.1 gb:AK058535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1006011/11Chloroplast 30S ribosomal protein S10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28094.1.S1_s_at--915--1591Chr03:5057778..5057802 (25 bp)
AGCTGAGGTCTTACTGGGTACCATT
LOC_Os03g10060
Os.28094.1.S1_s_at--184--7691Chr03:5057763..5057787 (25 bp)
GGGTACCATTGATCGAGGACTCCTG
LOC_Os03g10060
Os.28094.1.S1_s_at--357--4051Chr03:5057750..5057774 (25 bp)
CGAGGACTCCTGTAAGAAGATCATT
LOC_Os03g10060
Os.28094.1.S1_s_at--935--2331Chr03:5057702..5057726 (25 bp)
AAAGACGATGGGTCCAGTTCCTCTG
LOC_Os03g10060
Os.28094.1.S1_s_at--656--1231Chr03:5057687..5057711 (25 bp)
AGTTCCTCTGCCAACCAAGCGAAGA
LOC_Os03g10060
Os.28094.1.S1_s_at--267--231Chr03:5057660..5057684 (25 bp)
ATATTGTGTGCTCAATTCTCCTCAC
LOC_Os03g10060
Os.28094.1.S1_s_at--206--10591Chr03:5057645..5057669 (25 bp)
TTCTCCTCACGTGCACAAAGATTCA
LOC_Os03g10060
Os.28094.1.S1_s_at--927--10391Chr03:5057612..5057636 (25 bp)
TTTTGAGATCAGAACGCACCAGCGA
LOC_Os03g10060
Os.28094.1.S1_s_at--101--1851Chr03:5057599..5057623 (25 bp)
ACGCACCAGCGATTGATTGATATCA
LOC_Os03g10060
Os.28094.1.S1_s_at--708--8831Chr03:5057582..5057606 (25 bp)
TGATATCATGTACCCGACTGCACAA
LOC_Os03g10060
Os.28094.1.S1_s_at--307--291Chr03:5057554..5057578 (25 bp)
ATAGATTCCTTGATGCAGCTCCAGC
LOC_Os03g10060
Target Sequence 
AGCTGAGGTCTTACTGGGTACCATTGATCGAGGACTCCTGTAAGAAGATCATTGAAGCTGCAAAAACAACAAATGCAAAG
ACGATGGGTCCAGTTCCTCTGCCAACCAAGCGAAGAGTATATTGTGTGCTCAATTCTCCTCACGTGCACAAAGATTCAAG
GTTCCATTTTGAGATCAGAACGCACCAGCGATTGATTGATATCATGTACCCGACTGCACAAACAATAGATTCCTTGATGC
AGCTCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28094.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis