Browse Element(s) Details


Os.12703.1.S1_at

Description gb:AK070417.1
DB_XREF= gi:32980441
TID=Os.12703.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048F11, full insert sequence.
FL= gb:AK103915.1 gb:AK099273.1 gb:AK070417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1009011/11mannitol transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12703.1.S1_at--189--3231Chr03:5079200..5079224 (25 bp)
CAAGAGGTCCACTGAGCTGAGCGCT
LOC_Os03g10090
Os.12703.1.S1_at--168--1151Chr03:5079253..5079277 (25 bp)
AGTCCGAGTGTGGTCGAAGCCTATT
LOC_Os03g10090
Os.12703.1.S1_at--963--5411Chr03:5079268..5079292 (25 bp)
GAAGCCTATTCGTTCTCCGATAGAA
LOC_Os03g10090
Os.12703.1.S1_at--588--1551Chr03:5079296..5079320 (25 bp)
AGCTTCGACATCGTGTGTTGCTTTG
LOC_Os03g10090
Os.12703.1.S1_at--935--1391Chr03:5079358..5079382 (25 bp)
AGACTTTTGGATCTCGTGCACATCA
LOC_Os03g10090
Os.12703.1.S1_at--193--7351Chr03:5079373..5079397 (25 bp)
GTGCACATCAGCTTGTTGGCCTTAG
LOC_Os03g10090
Os.12703.1.S1_at--869--7391Chr03:5079443..5079467 (25 bp)
GTGATATTCCACACTGCAGGGACGA
LOC_Os03g10090
Os.12703.1.S1_at--136--2431Chr03:5079477..5079501 (25 bp)
AAAAGGTCGCAGTCACCGTTGCGGT
LOC_Os03g10090
Os.12703.1.S1_at--892--5091Chr03:5079513..5079537 (25 bp)
GCACGGATCTGTGGGTCTTTTTCAC
LOC_Os03g10090
Os.12703.1.S1_at--1157--8731Chr03:5079540..5079564 (25 bp)
TGTACAACAATTCAACCGGCCAATC
LOC_Os03g10090
Os.12703.1.S1_at--360--7251Chr03:5079705..5079729 (25 bp)
GTCCCTGTGTGACTGTCGCTTAATA
LOC_Os03g10090
Target Sequence 
CAAGAGGTCCACTGAGCTGAGCGCTCAGCACTGAACAGAACACGTCCGTCCCGAGTCCGAGTGTGGTCGAAGCCTATTCG
TTCTCCGATAGAAAAAAGCTTCGACATCGTGTGTTGCTTTGTGAATCTTCAGATTCTGGCCACTTAGGTTAGATTGCTAG
ACTTTTGGATCTCGTGCACATCAGCTTGTTGGCCTTAGCCAACATGTAGGGACATTGAGCTGCTTTACGGGGGAAAAGAT
CGTGTGATATTCCACACTGCAGGGACGANTCCACGTAAAAAGGTCGCAGTCACCGTTGCGGTTACGCAGCTTGGCACGGA
TCTGTGGGTCTTTTTCACCCTGTACAACAATTCAACCGGCCAATCCTTCGACGACAGCATTGAGATCCAGGGAGCCAGGG
TCTACCTGGCTATGTTTTCTTGTTCAGATATTACCGTGGCAGTGTAATTGTATACGAGTCTATAATGTATATAGCTTTTT
ATGTATATGACTCGNTCACTTTTGTGTCCCTGTGTGACTGTCGCTTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis