Browse Element(s) Details


Os.6372.1.S1_at

Description gb:AK102651.1
DB_XREF= gi:32987860
TID=Os.6372.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101B21, full insert sequence.
FL= gb:AK102651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1011011/11Cupin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6372.1.S1_at--334--6011Chr03:5097836..5097860 (25 bp)
GAGAGCGGCAGATTCGTTTGCCCAG
LOC_Os03g10110
Os.6372.1.S1_at--797--6551Chr03:5097846..5097870 (25 bp)
GATTCGTTTGCCCAGGAGCTTGAAA
LOC_Os03g10110
Os.6372.1.S1_at--234--2871Chr03:5097889..5097913 (25 bp)
AAGGGCAGGCTCTCCAGTGGCTAAG
LOC_Os03g10110
Os.6372.1.S1_at--417--6151Chr03:5097938..5097962 (25 bp)
GAGGTGAACGCGTCCAGCTACAGTA
LOC_Os03g10110
Os.6372.1.S1_at--455--4351Chr03:5097951..5097975 (25 bp)
CCAGCTACAGTAGTTTCTGCGTAAA
LOC_Os03g10110
Os.6372.1.S1_at--257--3091Chr03:5097974..5097998 (25 bp)
AATAATGCTGGTCTTGCTCGTGTAG
LOC_Os03g10110
Os.6372.1.S1_at--715--10031Chr03:5097996..5098020 (25 bp)
TAGAGGCCGGCCTGCATACTACGTG
LOC_Os03g10110
Os.6372.1.S1_at--1113--9891Chr03:5098012..5098036 (25 bp)
TACTACGTGCGTACTTTCGTTTCTT
LOC_Os03g10110
Os.6372.1.S1_at--112--10311Chr03:5098031..5098055 (25 bp)
TTTCTTCCACTGTGTCGTGATGTAG
LOC_Os03g10110
Os.6372.1.S1_at--68--6271Chr03:5098075..5098099 (25 bp)
GATGTGTATAATCGTAGCCTCCTCC
LOC_Os03g10110
Os.6372.1.S1_at--784--8651Chr03:5098141..5098165 (25 bp)
TGTGTATAAACGTAGCTTTCCTCTC
LOC_Os03g10110
Target Sequence 
GAGAGCGGCAGATTCGTTTGCCCAGGAGCTTGAAAAAACGCTTCATNGGNATCAAGGGCAGGCTCTCCAGTGGCTAAGCA
AGTGAGCAGAGAGGGACATTTGGAGGTGAACGCGTCCAGCTACAGTAGTTTCTGCGTAAATAATGCTGGTCTTGCTCGTG
TAGAGGCCGGCCTGCATACTACGTGCGTACTTTCGTTTCTTCCACTGTGTCGTGATGTAGCTGAGTTAAATAAGCTGTTG
ATGTGTATAATCGTAGCCTCCTCCCTTCCAAGAACCCGCCTGTAAACGGTTAAGTAAGCTGTTAATGTGTATAAACGTAG
CTTTCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis