Browse Element(s) Details


Os.26868.1.A1_at

Description gb:CB623091
DB_XREF= gi:29618079
DB_XREF=OSIIEa10J10.r
CLONE=OSIIEa10J10
TID=Os.26868.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26868 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179438.1 (A.thaliana) putative sugar transporter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g101009/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26868.1.A1_at--277--7071NONE
GTAATAATACTACTCCGGTGTGCAA
NONE
Os.26868.1.A1_at--1124--1991Chr03:5093289..5093313 (25 bp)
ACTACTCCGGTGTGCAATTAGTGAC
LOC_Os03g10100
Os.26868.1.A1_at--924--9271Chr03:5093294..5093318 (25 bp)
TCCGGTGTGCAATTAGTGACCGTGT
LOC_Os03g10100
Os.26868.1.A1_at--832--2411Chr03:5093343..5093367 (25 bp)
AAAAAGATTTCATCTGCCGCAGGTC
LOC_Os03g10100
Os.26868.1.A1_at--750--2811Chr03:5093346..5093370 (25 bp)
AAGATTTCATCTGCCGCAGGTCGTC
LOC_Os03g10100
Os.26868.1.A1_at--537--1031Chr03:5093363..5093387 (25 bp)
AGGTCGTCCCCAAATGCTCGTGATG
LOC_Os03g10100
Os.26868.1.A1_at--494--9291Chr03:5093369..5093393 (25 bp)
TCCCCAAATGCTCGTGATGAACCTT
LOC_Os03g10100
Os.26868.1.A1_at--907--3011Chr03:5093375..5093399 (25 bp)
AATGCTCGTGATGAACCTTGATTTC
LOC_Os03g10100
Os.26868.1.A1_at--847--5411Chr03:5093387..5093411 (25 bp)
GAACCTTGATTTCATTCTACGGAGC
LOC_Os03g10100
Os.26868.1.A1_at--812--6531Chr03:5093394..5093418 (25 bp)
GATTTCATTCTACGGAGCTTGGGCA
LOC_Os03g10100
Os.26868.1.A1_at--609--9591NONE
TCATTCTACGGAGCTTGGGCAAAGA
NONE
Target Sequence 
GTAATAATACTACTCCGGTGTGCAATTAGTGACCGTGTANGTACAAAAGCTTCGGTAAGGAAAAAAAGATTTCATCTGCC
GCAGGTCGTCCCCAAATGCTCGTGATGAACCTTGATTTCATTCTACGGAGCTTGGGCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26868.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis