Browse Element(s) Details


Os.10672.1.S1_at

Description gb:AK071163.1
DB_XREF= gi:32981186
TID=Os.10672.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079A07, full insert sequence.
FL= gb:AK071163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1008011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10672.1.S1_at--521--2351Chr03:5066605..5066629 (25 bp)
AAAGCAGCCAGCTTACTTTGCTCAA
LOC_Os03g10080
Os.10672.1.S1_at--176--2151Chr03:5066530..5066554 (25 bp)
ACAGAAGCTGACATGTCCGGTGCAT
LOC_Os03g10080
Os.10672.1.S1_at--704--10831Chr03:5066381..5066405 (25 bp)
TTGTGGTGGACCAGAACCTGATCTT
LOC_Os03g10080
Os.10672.1.S1_at--1154--10551Chr03:5066358..5066382 (25 bp)
TTCTTCTTGTGTATGGCCCTGCTAG
LOC_Os03g10080
Os.10672.1.S1_at--51--4511Chr03:5066343..5066367 (25 bp)
GCCCTGCTAGATGCCATTTAGGTTT
LOC_Os03g10080
Os.10672.1.S1_at--32--871Chr03:5065499..5065523 (25 bp)
ATGGCGCCATTGTGAAAGCATTCTA
LOC_Os03g10080
Os.10672.1.S1_at--980--7431Chr03:5064987..5065011 (25 bp)
GTGTAGAAAGCCACTCCTGGAGCTG
LOC_Os03g10080
Os.10672.1.S1_at--986--10351Chr03:5064936..5064960 (25 bp)
TTTTTCTTTTTATCCCATGTTGCTG
LOC_Os03g10080
Os.10672.1.S1_at--500--6471Chr03:5064876..5064900 (25 bp)
GATACACCTTGTACTTGCTTTTGCA
LOC_Os03g10080
Os.10672.1.S1_at--912--231Chr03:5064814..5064838 (25 bp)
ATATCCCATTGTATAACTTGCTCCC
LOC_Os03g10080
Os.10672.1.S1_at--974--2511Chr03:5064800..5064824 (25 bp)
AACTTGCTCCCATTCTAATGTGTGA
LOC_Os03g10080
Target Sequence 
AAAGCAGCCAGCTTACTTTGCTCAACTTGTGTGAACGGCAATAGGAATACTTGTGGAAATGGTGAAATAGTATTTACAGA
AGCTGACATGTCCGGTGCATTGAAAGCAATAGGTTGTGGTGGACCAGAACCTGATCTTCTTCTTGTGTATGGCCCTGCTA
GATGCCATTTAGGTTTTCCTGCATGGAGATTGCGGTATACTGAGATAATGCATATGGGACCACTGAATTCAATGAAATAT
GGCGCCATTGTGAAAGCATTCTATAAATTCTCGAAGAAATACCAAAATTTTGGTAAATGAGAGCTGATACTGAGATAGAG
AAGACAACATGTCATGTGTAGAAAGCCACTCCTGGAGCTGGAAGCTTAACAATAGTTTTGCCTTTCTTTTTCTTTTTATC
CCATGTTGCTGATCACTATACTAAACGTTACGAGCAATAATTCACAGATACACCTTGTACTTGCTTTTGCAATATTGTAA
GTGTTGCTGATAGAACATACGGGAAATTATATCCCATTGTATAACTTGCTCCCATTCTAATGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis