Browse Element(s) Details


Os.28094.1.S1_at

Description gb:AK058535.1
DB_XREF= gi:32968553
TID=Os.28094.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A12, full insert sequence.
FL= gb:AK104108.1 gb:AK058535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1006010/11Chloroplast 30S ribosomal protein S10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28094.1.S1_at--656--811NONE
ATGGGGAGCAGTTGGCACCCAAGCA
NONE
Os.28094.1.S1_at--483--4871Chr03:5057501..5057525 (25 bp)
GCTATGATTTCATGATTCACGTGGA
LOC_Os03g10060
Os.28094.1.S1_at--14--10551Chr03:5057493..5057517 (25 bp)
TTCATGATTCACGTGGAGCTGGAGT
LOC_Os03g10060
Os.28094.1.S1_at--977--6551Chr03:5057488..5057512 (25 bp)
GATTCACGTGGAGCTGGAGTTTTAA
LOC_Os03g10060
Os.28094.1.S1_at--1001--3331Chr03:5057484..5057508 (25 bp)
CACGTGGAGCTGGAGTTTTAAAATT
LOC_Os03g10060
Os.28094.1.S1_at--964--4711Chr03:5057476..5057500 (25 bp)
GCTGGAGTTTTAAAATTTGCTGGTG
LOC_Os03g10060
Os.28094.1.S1_at--182--211Chr03:5057462..5057486 (25 bp)
ATTTGCTGGTGTAATGTAATGCTCT
LOC_Os03g10060
Os.28094.1.S1_at--111--431Chr03:5057431..5057455 (25 bp)
ATCATTTTGCTATCCGAGACTTGAA
LOC_Os03g10060
Os.28094.1.S1_at--1068--9071Chr03:5057424..5057448 (25 bp)
TGCTATCCGAGACTTGAACAAATGT
LOC_Os03g10060
Os.28094.1.S1_at--367--5511Chr03:5057409..5057433 (25 bp)
GAACAAATGTAGAGCAACAGGGAAA
LOC_Os03g10060
Os.28094.1.S1_at--571--5331Chr03:5057371..5057395 (25 bp)
GAAGTATTGAATGAGAATGTCACTT
LOC_Os03g10060
Target Sequence 
ATGGGGAGCAGTTGGCACCCAAGCAGAAGATCAGAATTAAGCTGAGGTCTTACTGGGTACCATTGATCGAGGACTCCTGT
AAGAAGATCATTGAAGCTGCAAAAACAACAAATGCAAAGACGATGGGTCCAGTTCCTCTGCCAACCAAGCGAAGAGTATA
TTGTGTGCTCAATTCTCCTCACGTGCACAAAGATTCAAGGTTCCATTTTGAGATCAGAACGCACCAGCGATTGATTGATA
TCATGTACCCGACTGCACAAACAATAGATTCCTTGATGCAGCTCCAGCTCCCTGCCGGGGTAGATGTTGAGGTTAAGCTA
TGATTTCATGATTCACGTGGAGCTGGAGTTTTAAAATTTGCTGGTGTAATGTAATGCTCTTTTCTGATCATTTTGCTATC
CGAGACTTGAACAAATGTAGAGCAACAGGGAAAAAAGTTCGTATATGAAGTATTGAATGAGAATGTCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis