Browse Element(s) Details


Os.57016.1.S1_at

Description gb:AK110751.1
DB_XREF= gi:32995960
TID=Os.57016.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-G07, full insert sequence.
FL= gb:AK110751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1007011/11TFIIB-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed
LOC_Os03g10060OsAffx.12804.1.S1_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_s_at11/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10060Os.28094.1.S1_at10/113+5057365..5060827Chloroplast 30S ribosomal protein S10, putative, expressed
LOC_Os03g10070Os.57016.1.S1_at11/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10070OsAffx.25033.1.S1_x_at9/113+5061547..5062603TFIIB-related protein, putative, expressed
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57016.1.S1_at--34--1051Chr03:5061615..5061639 (25 bp)
AGGTGAATGTTGTGGCTGTACACGT
LOC_Os03g10070
Os.57016.1.S1_at--416--8971Chr03:5061612..5061636 (25 bp)
TGAATGTTGTGGCTGTACACGTAAA
LOC_Os03g10070
Os.57016.1.S1_at--461--731Chr03:5061609..5061633 (25 bp)
ATGTTGTGGCTGTACACGTAAATTC
LOC_Os03g10070
Os.57016.1.S1_at--537--6611Chr03:5061607..5061631 (25 bp)
GTTGTGGCTGTACACGTAAATTCAC
LOC_Os03g10070
Os.57016.1.S1_at--1007--7531Chr03:5061604..5061628 (25 bp)
GTGGCTGTACACGTAAATTCACTAG
LOC_Os03g10070
Os.57016.1.S1_at--314--8491Chr03:5061603..5061627 (25 bp)
TGGCTGTACACGTAAATTCACTAGT
LOC_Os03g10070
Os.57016.1.S1_at--542--4731Chr03:5061601..5061625 (25 bp)
GCTGTACACGTAAATTCACTAGTGA
LOC_Os03g10070
Os.57016.1.S1_at--418--7031Chr03:5061598..5061622 (25 bp)
GTACACGTAAATTCACTAGTGACAA
LOC_Os03g10070
Os.57016.1.S1_at--261--2031Chr03:5061596..5061620 (25 bp)
ACACGTAAATTCACTAGTGACAATG
LOC_Os03g10070
Os.57016.1.S1_at--781--7611Chr03:5061557..5061581 (25 bp)
GGGAACTGCTCTGTGAATATAGATG
LOC_Os03g10070
Os.57016.1.S1_at--376--8171Chr03:5061556..5061580 (25 bp)
GGAACTGCTCTGTGAATATAGATGT
LOC_Os03g10070
Target Sequence 
AGGTGAATGTTGTGGCTGTACACGTAAATTCACTAGTGACAATGATGGAAAATGTAAGGGGAACTGCTCTGTGAATATAG
ATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis