Browse Element(s) Details


OsAffx.12803.1.S1_at

Description tigr:9631.m00905
TID=OsAffx.12803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY124824 At2g35760T20F21.5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g100309/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10010OsAffx.25030.1.S1_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10010OsAffx.25030.1.S1_x_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10019NANA3+5007085..5007707NA
LOC_Os03g10030OsAffx.12803.1.S1_at9/113+5013431..5019120plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os03g10040NANA3+5028371..5028907F-box domain containing protein
LOC_Os03g10050OsAffx.25032.1.S1_s_at11/113+5042935..5044296satase isoform II, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12803.1.S1_at--989--5291Chr03:5013646..5013670 (25 bp)
GAAGGTCGCCCGGTACACCGACATG
LOC_Os03g10030
OsAffx.12803.1.S1_at--792--2091NONE
ACATGCAGTCCCTCGTGGTTAATAA
NONE
OsAffx.12803.1.S1_at--65--851Chr03:5015476..5015500 (25 bp)
ATGGACCCTCCATGCAAAAATATAG
LOC_Os03g10030
OsAffx.12803.1.S1_at--183--3671Chr03:5015546..5015570 (25 bp)
CTTACGCTATTTTGCTTACTGTGAC
LOC_Os03g10030
OsAffx.12803.1.S1_at--219--8791Chr03:5016695..5016719 (25 bp)
TGTTATAGCCTAATCCAGTGTGCAA
LOC_Os03g10030
OsAffx.12803.1.S1_at--438--3231NONE
CAAGATGCTTGGTGATGGCGTACAT
NONE
OsAffx.12803.1.S1_at--26--9891Chr03:5018857..5018881 (25 bp)
TACATAGTGATCTCAGCGGTGGCCG
LOC_Os03g10030
OsAffx.12803.1.S1_at--368--671Chr03:5018935..5018959 (25 bp)
ATGAAGACGTGCCACCTCTACAAGC
LOC_Os03g10030
OsAffx.12803.1.S1_at--580--9531Chr03:5018951..5018975 (25 bp)
TCTACAAGCGGTTCTGCGCGCAGGC
LOC_Os03g10030
OsAffx.12803.1.S1_at--536--531Chr03:5018998..5019022 (25 bp)
ATCGCGGCCAGCGTGAACATGGTCG
LOC_Os03g10030
OsAffx.12803.1.S1_at--838--9571Chr03:5019050..5019074 (25 bp)
TCTTCCGGTTGTACGGCAACAGCAA
LOC_Os03g10030
Target Sequence 
GAAGGTCGCCCGGTACACCGACATGCAGTCCCTCGTGGTTAATAATGGACCCTCCATGCAAAAATATAGGGGCGTCTTTG
ACGGTCCAAAAACAAGTTTCTATCGTAAATTTCTCTTACGCTATTTTGCTTACTGTGACAAAATCATACTACTAGACATA
AGAAGGCTCTTGGTGATAGCAAATGGGATGGCTGCGTGTTATAGCCTAATCCAGTGTGCAAGATGCTTGGTGATGGCGTA
CATAGTGATCTCAGCGGTGGCCGCGGCGATGGAGGCGGCGCTGATCGGCAAGTACGGGCAGCCGGAGTTCCAGTGGATGA
AGACGTGCCACCTCTACAAGCGGTTCTGCGCGCAGGCCGGCGGCGGCGTGGCGTGCGCCATCGCGGCCAGCGTGAACATG
GTCGGCGTCGCGCTCATCTCGGCGTTCAACCTCTTCCGGTTGTACGGCAACAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis