Browse Element(s) Details


OsAffx.25030.1.S1_x_at

Description tigr:9631.m00903
TID=OsAffx.25030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1001011/11hypothetical protein
LOC_Os11g125301/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09970Os.19822.1.S1_at11/113+4966994..4971526Sulfate transporter 1.2, putative, expressed
LOC_Os03g09980Os.5588.1.S1_s_at11/113+4977513..4981290Sulfate transporter 1.2, putative, expressed
LOC_Os03g09990NANA3+4982389..4984083retrotransposon protein, putative, unclassified
LOC_Os03g10000NANA3+4984783..4987921retrotransposon protein, putative, unclassified
LOC_Os03g10010OsAffx.25030.1.S1_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10010OsAffx.25030.1.S1_x_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10019NANA3+5007085..5007707NA
LOC_Os03g10030OsAffx.12803.1.S1_at9/113+5013431..5019120plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25030.1.S1_x_at--952--9251Chr03:4993495..4993519 (25 bp)
TCCGGGTGCAAGAACCACCTCGGCT
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--109--7711Chr03:4993498..4993522 (25 bp)
GGGTGCAAGAACCACCTCGGCTGCT
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--894--9011Chr03:4993501..4993525 (25 bp)
TGCAAGAACCACCTCGGCTGCTCAT
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--565--5431Chr03:4993506..4993530 (25 bp)
GAACCACCTCGGCTGCTCATTGGTG
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--1065--8311Chr03:4993516..4993540 (25 bp)
GGCTGCTCATTGGTGCCGTTCACCG
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--346--10511Chr03:4993534..4993558 (25 bp)
TTCACCGCCGCGTGATGAAGGCCAA
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--224--1791Chr03:4993537..4993561 (25 bp)
ACCGCCGCGTGATGAAGGCCAAGGC
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--1097--4571Chr03:4993620..4993644 (25 bp)
GCGCACCCTGTTCAGCTCCTTGTTG
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--1073--9231Chr03:4993660..4993684 (25 bp)
TCCTTCACCTTCTGCAGGTTTCTGA
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--660--4311Chr03:4993661..4993685 (25 bp)
CCTTCACCTTCTGCAGGTTTCTGAA
LOC_Os03g10010
OsAffx.25030.1.S1_x_at--854--1012Chr03:4993675..4993699 (25 bp)
AGGTTTCTGAACCTCTCCTGGAGGA
LOC_Os03g10010
Target Sequence 
TCCGGGTGCAAGAACCACCTCGGCTGCTCATTGGTGCCGTTCACCGCCGCGTGATGAAGGCCAAGGCCGAGAGCCGACGC
CGACGCCGAGCCGGCGGCGGCGGCGCGGTCGTGAGCGTCGGCGGGGCGCACCCTGTTCAGCTCCTTGTTGCCCGCCTCCC
TCATCTCCTTCACCTTCTGCAGGTTTCTGAACCTCTCCTGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25030.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis