Browse Element(s) Details


Os.19822.1.S1_at

Description gb:AK103007.1
DB_XREF= gi:32988216
TID=Os.19822.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19822 (NCBI UniGene Cluster)
UG_TITLE=Putative sulphate transporter (Sultr1-1) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116I10, full insert sequence.
FL= gb:AK103007.1 gb:AF493792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0997011/11Sulfate transporter 1.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09950NANA3+4946364..4946609retrotransposon protein, putative, unclassified
LOC_Os03g09960NANA3+4949508..4950131hypothetical protein
LOC_Os03g09970Os.19822.1.S1_at11/113+4966994..4971526Sulfate transporter 1.2, putative, expressed
LOC_Os03g09980Os.5588.1.S1_s_at11/113+4977513..4981290Sulfate transporter 1.2, putative, expressed
LOC_Os03g09990NANA3+4982389..4984083retrotransposon protein, putative, unclassified
LOC_Os03g10000NANA3+4984783..4987921retrotransposon protein, putative, unclassified
LOC_Os03g10010OsAffx.25030.1.S1_at11/113+4993464..4993784hypothetical protein
LOC_Os03g10010OsAffx.25030.1.S1_x_at11/113+4993464..4993784hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0005886cellular_componentplasma membrane
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19822.1.S1_at--706--3031Chr03:4970946..4970966 (21 bp)
AATCCAGCTGATTCTAGCCAATCCG
LOC_Os03g09970
Os.19822.1.S1_at--909--9591Chr03:4971123..4971147 (25 bp)
TCATTCTTTTGCAAGCTCCATGTTT
LOC_Os03g09970
Os.19822.1.S1_at--225--4791Chr03:4971137..4971161 (25 bp)
GCTCCATGTTTGCAGGTGTGATTTA
LOC_Os03g09970
Os.19822.1.S1_at--938--10851Chr03:4971233..4971257 (25 bp)
TTGGAGCGCATCAGGTTTGCAAGAT
LOC_Os03g09970
Os.19822.1.S1_at--492--2351Chr03:4971271..4971295 (25 bp)
AAAGCAGATGGTGCCCGTTGCATAT
LOC_Os03g09970
Os.19822.1.S1_at--569--6671Chr03:4971287..4971311 (25 bp)
GTTGCATATCTACTTCAGTGGCTGT
LOC_Os03g09970
Os.19822.1.S1_at--779--6911Chr03:4971324..4971348 (25 bp)
GTATGTTGGCAAGCACTTTGGGTGA
LOC_Os03g09970
Os.19822.1.S1_at--478--2691Chr03:4971389..4971413 (25 bp)
AAGCTGTCAGTGTGTATCTCCATCT
LOC_Os03g09970
Os.19822.1.S1_at--3--471Chr03:4971404..4971428 (25 bp)
ATCTCCATCTGGTTGTAATTACCCC
LOC_Os03g09970
Os.19822.1.S1_at--324--4191Chr03:4971427..4971451 (25 bp)
CCCTTTCTTTCTACTTGATCAAGCG
LOC_Os03g09970
Os.19822.1.S1_at--939--2991Chr03:4971487..4971511 (25 bp)
AATGTTGTCTATAGCGTCCATCCAA
LOC_Os03g09970
Target Sequence 
AATCCAGCTGATTCTAGCCAATCCGGGGCCANGCTGTGATCCTGAAGCTCCGATCANCGAAATTCACGGATCTCATCGNT
GAAGACAAGATATTCCTGACTGTCGGGGACGCAGTGAAGANATTTGCTCCTAAGGCAGTNGAGAATGTCTGAAGAAACAG
GCATAGTACAGAGAAGTTATTNTCATTCTTTTGCAAGCTCCATGTTTGCAGGTGTGATTTATAGAGCAGAGCAGCACAGG
AAGTGCATAACATAGTTTTTCAAAAAGGTAAAATAAAGGTGGTGTGCCGGAGTTGGAGCGCATCAGGTTTGCAAGATATG
GTTGGAGAAAAAAGCAGATGGTGCCCGTTGCATATCTACTTCAGTGGCTGTGAATTGTGATTAGTATGTTGGCAAGCACT
TTGGGTGAAAGTTTGATGGATAAGATAAGAAAAGATAGTCATTTGCTTAAGCTGTCAGTGTGTATCTCCATCTGGTTGTA
ATTACCCCCTTTCTTTCTACTTGATCAAGCGTACAAATTACAATGAGGTTTTACTTTTTGACGACCAATGTTGTCTATAG
CGTCCATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis