Browse Element(s) Details


OsAffx.12788.1.S1_at

Description tigr:9631.m00818
TID=OsAffx.12788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08690Os.50581.1.S1_at11/113+4458791..4460364expressed protein
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12788.1.S1_at--547--4491Chr03:4469119..4469143 (25 bp)
GCCGGTCAGGCCTTCCGCGTGAAGC
LOC_Os03g08710
OsAffx.12788.1.S1_at--399--4671Chr03:4469180..4469204 (25 bp)
GCGGGCGCGAGAAGAGCTCCGACGA
LOC_Os03g08710
OsAffx.12788.1.S1_at--1080--8791Chr03:4469207..4469231 (25 bp)
TGTTCGTCTGCGAGCGCGTGTGCAC
LOC_Os03g08710
OsAffx.12788.1.S1_at--1069--1651Chr03:4469219..4469243 (25 bp)
AGCGCGTGTGCACCTCCAAGCGGAT
LOC_Os03g08710
OsAffx.12788.1.S1_at--1145--7331Chr03:4469226..4469250 (25 bp)
GTGCACCTCCAAGCGGATGCTCAAG
LOC_Os03g08710
OsAffx.12788.1.S1_at--160--8091Chr03:4469345..4469369 (25 bp)
GGACCGTCTGCGTCAACCAGCACCA
LOC_Os03g08710
OsAffx.12788.1.S1_at--231--1011Chr03:4469369..4469393 (25 bp)
AGGTCCCCAACTGGAACGACGTCTG
LOC_Os03g08710
OsAffx.12788.1.S1_at--15--2571Chr03:4469377..4469401 (25 bp)
AACTGGAACGACGTCTGCCTCAAGA
LOC_Os03g08710
OsAffx.12788.1.S1_at--1001--8171Chr03:4469381..4469405 (25 bp)
GGAACGACGTCTGCCTCAAGAGGTG
LOC_Os03g08710
OsAffx.12788.1.S1_at--123--5771Chr03:4469386..4469410 (25 bp)
GACGTCTGCCTCAAGAGGTGCCAGA
LOC_Os03g08710
OsAffx.12788.1.S1_at--1096--3811Chr03:4469391..4469415 (25 bp)
CTGCCTCAAGAGGTGCCAGAGCGAG
LOC_Os03g08710
Target Sequence 
GCCGGTCAGGCCTTCCGCGTGAAGCGGCGGCGGGACGAGGAGCAGCGCCTCAAGGCGGCGCGCGGGCGCGAGAAGAGCTC
CGACGAGGTGTTCGTCTGCGAGCGCGTGTGCACCTCCAAGCGGATGCTCAAGAAGGTGGGGGCCTTCTCCAAGGACCCCA
TCCCGGAGACCTGCGTCACCGTCTGCGGCGTCTCCGAGCTCGACGCCTGCGCCGACGCATGCGCCCGGACCGTCTGCGTC
AACCAGCACCAGGTCCCCAACTGGAACGACGTCTGCCTCAAGAGGTGCCAGAGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis