Browse Element(s) Details


Os.31623.1.S1_x_at

Description gb:AK107016.1
DB_XREF= gi:32992225
TID=Os.31623.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514G12.35 (P0514G12.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G09, full insert sequence.
FL= gb:AK107016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3364011/11expressed protein
LOC_Os01g398702/11hypothetical protein
LOC_Os03g086701/11hypothetical protein
LOC_Os10g416601/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33610Os.50951.1.S1_at11/112+20000095..20007983RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os02g33620Os.45957.4.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.14084.1.S1_x_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33620OsAffx.4917.1.S1_at1/112+20011225..20016260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g33630OsAffx.24557.1.S1_at11/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33630Os.30311.1.S1_at1/112+20020771..20024193WD-40 repeat family protein, putative
LOC_Os02g33640Os.31623.1.S1_x_at11/112+20028347..20030613expressed protein
LOC_Os02g33640Os.31623.1.S1_at11/112+20028347..20030613expressed protein
LOC_Os02g33650OsAffx.12335.1.S1_at11/112+20033376..20033645hypothetical protein
LOC_Os02g33660OsAffx.12336.1.S1_at10/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.27834.1.S1_x_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33660Os.51123.1.S1_at1/112+20034994..20037551hypothetical protein
LOC_Os02g33670Os.54066.1.S1_at10/112+20050581..20051491expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31623.1.S1_x_at--1102--1552Chr06:572898..572922 (25 bp)
AGCTAAGCTAGCTCACCTTCCTCTT
NONE
Os.31623.1.S1_x_at--488--2753Chr08:17005181..17005205 (25 bp)
AAGAACGCAAGAACGCAGCGAGAGA
NONE
Os.31623.1.S1_x_at--1137--5434Chr08:17005219..17005243 (25 bp)
GAACCGGAGGAATTGATGTCGTCTT
NONE
Os.31623.1.S1_x_at--388--3174Chr10:22105677..22105700 (24 bp)
AATTGATGTCGTCTTCGGCTGTGAT
LOC_Os10g41660
Os.31623.1.S1_x_at--502--1314Chr08:17005321..17005345 (25 bp)
AGATGGTGGCGTCCGTCTCCATCCA
NONE
Os.31623.1.S1_x_at--47--853Chr08:17005485..17005509 (25 bp)
ATGGAGCGGCTCATCTCGCAGCTGC
NONE
Os.31623.1.S1_x_at--228--2054Chr06:573393..573417 (25 bp)
AAACGGTTTTTCTGATTGTACTGCA
NONE
Os.31623.1.S1_x_at--891--10372Chr06:573400..573424 (25 bp)
TTTTCTGATTGTACTGCAGCGTCAA
NONE
Os.31623.1.S1_x_at--95--6612Chr06:573406..573430 (25 bp)
GATTGTACTGCAGCGTCAAACATTT
NONE
Os.31623.1.S1_x_at--926--10012Chr02:20030552..20030576 (25 bp)
TAGACTCCTTTTAAAATGAACTACA
LOC_Os02g33640
Os.31623.1.S1_x_at--907--8952Chr03:4447247..4447268 (22 bp)
TGAACTACAACGTCAAACAAAACGG
LOC_Os03g08670
Target Sequence 
AGCTAAGCTAGCTCACCTTCCTCTTCACCACCAAGAACGCAAGAACGCAGCGAGAGAGGAGGAGATTCAAGAACCGGAGG
AATTGATGTCGTCTTCGGCTGTGATTCCGCCGCCGTCGCCGGAGAGGAGGGTGCCGATGGTGGCCGACGACGGAGGTGGA
GGACATGGGACGAGATGGTGGCGTCCGTCTCCATCCACTACTTCATCTGCCACATGTGCCGCCACGCCGCCGCCCGGGGC
TCGTCGGCCTTCTCCGCCGNGTNGTCGGCGTCTTCCTCTGCTGCGCCGGTGCTTCCCGTCGTGGTGCGTCCCGCGTTGGN
GGAGCACGCGGCGGANATGGAGCGGCTCATCTCGCAGCTGCCNCTCTTCACGCTNGCGTCGTCGNTGGCGGCGCTCCCGA
AGTCGTCCCGCGCCNGCTGCCGCCATCCCCTGCTTCTCCACGCCGTCTCCGGCGAGGAAGGTGACTGTCGCCGTCGAACA
GAGGGGTAAAGATGGAAACGGTTTTTCTGATTGTACTGCAGCGTCAAACATTTAGACTCCTTTTAAAATGAACTACAACG
TCAAACAAAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31623.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis